Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02226 ATGGATTCGAACGCCATGGCACAACTCCAAAGACCTTCAACCCAAACCCCAACCCTGCTCGATTCTCTGGGCGAAGAAATCATCAGAATTGTAGCCCCAGTCTCAATCTGCATGTTCCTCGTTGTAATCCTCGTCTCCATTCTCAACACCGGTGACTCTTCCTTCTCCGTTTCCAGCATCGCCACCATTGCGTACACCGAGACAACCTCCGATTCCTCCTGGGACAAGTTCCTAGGTGCCCTGCTCAACTCCCTCGCCTTCGTCGTCGTCGTCACCGTGGCCACCTTCGTCCTCGTCCTCCTCTTCTATTTCAGGTGCACTGGCTTCCTCAAAATCTACATGGGTTTCTCCGCTTTCGTCGTTCTAGGGTTCCTCGGCGGGGAAGTTTTCATCTTTTTGATTCAGCATTTTAGTACCCCAATTGATTGTTTCACTTTCTTGTTGCTTCTGTGTAATTTTGCTGTTGTTGGTGTTATGGCTGTCTTTATGTCGAAAATGGCTATTATTGTTACTCAGAGTTACTTGGTTGTTATTGGGATTCTTGTAGCTTATTGGTTCACTATGTTGCCTGAATGGACCACTTGGGCCATGCTTGTTGCCATGGCATTGTATGATCTTGCTGCCGTTTTGTTGCCTATTGGTCCCTTGAGGCTTCTCGTTGAGCTCGCCATATCGCGGGACGAGGAGATTCCAGCTTTGGTTTATGAAGCTAGGCCTGTGAATGTTGAGAATTTGGATCCTAGGGTTGCTGTTGCTCAGAGGAGGCTGTGGAGAGAGAGGAGGGTTACCGAGAATTCTAATCTCCGGGGTGATGCTAATGTGAATGTTAGTAATAATAATGCCTTAGGTCTTGGTGCCAATGCTGAGTTGAACCCTGGTTTGGATTTAAACAGCAATAATCCCAGTTCGGCTGGGGAAGATGCTATTTTGGATTCGAATTTGAGTTCTAGTACTTCTTATGGGATCTATAGTGACAGGAATTTGGTTAGAGCTGAAGAGGGGCGAGTTCAGGAGACCAATTCAGAGGTTACTACCCCATTGATTGGTCATGGAGTGAATGTTCGGATACATAGCAGAGCAGAAAATGTGGATGCATCAGATGAGAATTTGATGTTGGAGGGAATTGGATTGGGTTCATCCGGCGCAATCAAGTTAGGACTGGGCGATTTCATCTTCTATAGTGTTTTGGTTGGCAGGGCTGCAATGTATGATTTTATGACTGTGTATGCGTGTTATCTCGCTATCATTGCTGGTCTGGGGATAACACTGATGCTTTTGGCTTTTTATCAGAAGGCTTTGCCTGCTCTTCCCGTGTCAGTCGCACTGGGGCACATAACTTTTGATGTCCCTCTTGGATCTAAGAAGGCCCTCTTTGGAGACCAATGGGAGAAGGGAAATGGAGATGTGGCAGATTGA 1416 0.4682 MDSNAMAQLQRPSTQTPTLLDSLGEEIIRIVAPVSICMFLVVILVSILNTGDSSFSVSSIATIAYTETTSDSSWDKFLGALLNSLAFVVVVTVATFVLVLLFYFRCTGFLKIYMGFSAFVVLGFLGGEVFIFLIQHFSTPIDCFTFLLLLCNFAVVGVMAVFMSKMAIIVTQSYLVVIGILVAYWFTMLPEWTTWAMLVAMALYDLAAVLLPIGPLRLLVELAISRDEEIPALVYEARPVNVENLDPRVAVAQRRLWRERRVTENSNLRGDANVNVSNNNALGLGANAELNPGLDLNSNNPSSAGEDAILDSNLSSSTSYGIYSDRNLVRAEEGRVQETNSEVTTPLIGHGVNVRIHSRAENVDASDENLMLEGIGLGSSGAIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGITLMLLAFYQKALPALPVSVALGHITFDVPLGSKKALFGDQWEKGNGDVAD 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02226 471 PRINTS Presenilin family signature 31 41 IPR001108 GO:0004190|GO:0016021|GO:0016485
Aip01g02226 471 PRINTS Presenilin family signature 188 195 IPR001108 GO:0004190|GO:0016021|GO:0016485
Aip01g02226 471 PRINTS Presenilin family signature 205 222 IPR001108 GO:0004190|GO:0016021|GO:0016485
Aip01g02226 471 PANTHER PRESENILIN 18 446 - -
Aip01g02226 471 PANTHER PRESENILIN 18 446 IPR001108 GO:0004190|GO:0016021|GO:0016485
Aip01g02226 471 Pfam Presenilin 24 447 IPR001108 GO:0004190|GO:0016021|GO:0016485
Aip01g02226 471 Gene3D Presenilin 364 450 IPR042524 -
Aip01g02226 471 SMART psh_8 78 455 IPR006639 GO:0004190|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02226 Aip-Chr1 117584456 117586105 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02226 1 447 Miscellaneous Gene Families AT2G29900 57.461 4.51e-143 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02226 K04505 - gmx:100799643 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02226 01 117584456 117586105 Aip01g02226 01 117584456 117586105 ECH