Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02125 ATGGTCGATATGTATGAATGGCCGGAATGGTCGAGATGTGTCTGTGGCAAGAATGGTCGAGATGACAAGGTCTGGGTGCGATCCCGCTTGCGTATTAACTTGAAAATGTGTTCGGAATGCAAGTTGAGGACGGAAGTTCCCTCTCTTGTCGTGACGAggatgtggagaagAAGCAAGGGTTCCCTTCCCGCCAGTGGAAGCAGCAGTAGAAGCTTTCAGCAGCGTGTGTTCTCCCTTTTGCAACGATGCAACAGCCTCAACATTCTCCTCCAAATCCACACCCAACTAATCCTCAACTCCCTCTCTTACAAGAACAACTTCATCTTCAAGCTCCTCTCTTTATACGTCTCCTACGGCCACCTCCACAATGCCCACACCCTCTTCTCCACTCTCCACAAACCCACCACCCCCCTCTGGAACCAGATCATCAGGGCCCATGCCCGAACCCCAGCAGCTCCTTTCAAATCTGTGGAGTGCTACAATCGCATGGTGGCTTCTGGGTCGGAGCCTGATGGGTTCACGTACTCGTTCCTTCTGAGCGCGTGCGCACGTGGTGGGTTGGTTGGGGAAGGGGAACAGGTGCATTGCAAGGTTTTGGTCAAAGGGTATTGCTACAATGTGTTTGTGGAGACAAGTTTGGTGAATTTCTATGCGGTGTGCGGTGGTGTTGGGAAAGCACGTTACGTGTTTGATGAAATGAATCAGAGAAGTGTTGCTAGCTGGAACTCTATGCTTGCTGGGTATGTTAGGTGTGGTGATTTTGATGGGGCCAGAAGGGTTTTCGATGAGATGCCTTGTAGGAATGTTGTGTCTTGGACCACCATGGTTGCCGGATGCGCTCGTGGCGGCAAGTGCAAGCAGGCTTTGTCGTTGTTTGGTGAGATGAGTAGGGCGGGTGTGGAATTGGACCAGGTGGCGCTGGTGGCTGCCTTGACAGCATGCGCTGAGTTGGGGGATCTAAAGTTGGGAAGATGGATACATTGGTATGTTGAACAGAGATTTGTTGTGAGGAACAATGAGCAGCCTTCATTGCGTTTGAGCAATGCACTCATTCATATGTATGCCAGTTGTGGAATCATTGATGATGCTTACAGAGTGTTTATCAATATGCCGCGGAAAAGCACTGTGTCTTGGACTAGCATCATCATGGCTTTTGCGAAACAAGGCCTTGGAAAGGAAGCGCTTGATCTTTTTAAGGCTATGCTTAGTGATGGTGTTGGTGTAAATGAAATAAGACCAGATGAAGTAACCTTCATTGGAGTGCTTTGTGCTTGCAGCCATGCTGGGTTTGTAGACGAAGGACGCCAGATTTTTGCATCTATGAAACATACTTGGGGAATCCACCCAAGGATTGAGCACTATGGATGCATGGTTGATCTCTTGAGCCGTGCTGGTTTCTTAGATGAAGCACAGGGACTTATCGAAACCATGCCTTTAAAACCAAATGATGTGCTATGGGGTGCCCTTCTTGGGGGTTGTCGAATACACAAGAACTCAGAACTAGCATCGGGAGTGGCAAACAAGGTAGTAGCCGAGCTCAACGTCAACCAAGCCGCAGGCTATCTTGTCCTCTTGTCAAACATATATGCTTTTGCCAAAAGGTGGCAGGATGTAGTTGCTATGAGACAAAAAATGATTGAGATGGGTGTTAAAAAGCCTCCGGGCAGAAGTGTTGTGCAAATTAATGGAGTTCTGCATAACTTTGTGGCTGGTGACGTGACGCATAAGCATTCTTATTATATCTATGAAACCCTCCATGAGATCACCAAACAAGCCAATTGGGAAGACTATGAACCAGACATAACAGAGAAGGAAGATGCTCATTTTCTGATTTTCAAAGTGGTTGGTGATTGTTGCTACTTGCTAGTTGCTAGTGATGGTACTAGTTTCATACTGGGTATGGCAAATTGGACAAGGCAGAGCAACAAGCCTTCTAGAAAAAGACTTGCAAGCGCCTCACCCATACTCATAGTCTCCTCCATGCTCCTCATCGCTGTCATCATTGCCGCCATCCTAGGCACCATCTTACACAGCCGCCGTTCCTCCTCCTCTTCCTTTGGCCCCTCAAAAGAGCTATTCCCACAGAAATAA 2091 0.4768 MVDMYEWPEWSRCVCGKNGRDDKVWVRSRLRINLKMCSECKLRTEVPSLVVTRMWRRSKGSLPASGSSSRSFQQRVFSLLQRCNSLNILLQIHTQLILNSLSYKNNFIFKLLSLYVSYGHLHNAHTLFSTLHKPTTPLWNQIIRAHARTPAAPFKSVECYNRMVASGSEPDGFTYSFLLSACARGGLVGEGEQVHCKVLVKGYCYNVFVETSLVNFYAVCGGVGKARYVFDEMNQRSVASWNSMLAGYVRCGDFDGARRVFDEMPCRNVVSWTTMVAGCARGGKCKQALSLFGEMSRAGVELDQVALVAALTACAELGDLKLGRWIHWYVEQRFVVRNNEQPSLRLSNALIHMYASCGIIDDAYRVFINMPRKSTVSWTSIIMAFAKQGLGKEALDLFKAMLSDGVGVNEIRPDEVTFIGVLCACSHAGFVDEGRQIFASMKHTWGIHPRIEHYGCMVDLLSRAGFLDEAQGLIETMPLKPNDVLWGALLGGCRIHKNSELASGVANKVVAELNVNQAAGYLVLLSNIYAFAKRWQDVVAMRQKMIEMGVKKPPGRSVVQINGVLHNFVAGDVTHKHSYYIYETLHEITKQANWEDYEPDITEKEDAHFLIFKVVGDCCYLLVASDGTSFILGMANWTRQSNKPSRKRLASASPILIVSSMLLIAVIIAAILGTILHSRRSSSSSFGPSKELFPQK 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02125 696 Pfam PPR repeat 240 268 IPR002885 -
Aip01g02125 696 Pfam PPR repeat 348 373 IPR002885 -
Aip01g02125 696 Pfam PPR repeat 270 300 IPR002885 -
Aip01g02125 696 Pfam PPR repeat 173 202 IPR002885 -
Aip01g02125 696 Pfam PPR repeat 453 477 IPR002885 -
Aip01g02125 696 Pfam PPR repeat 416 442 IPR002885 -
Aip01g02125 696 Pfam PPR repeat 376 406 IPR002885 -
Aip01g02125 696 Gene3D Tetratricopeptide repeat domain 410 572 IPR011990 GO:0005515
Aip01g02125 696 Gene3D Tetratricopeptide repeat domain 333 409 IPR011990 GO:0005515
Aip01g02125 696 Gene3D Tetratricopeptide repeat domain 237 332 IPR011990 GO:0005515
Aip01g02125 696 Gene3D Tetratricopeptide repeat domain 104 236 IPR011990 GO:0005515
Aip01g02125 696 Pfam E motif 496 560 IPR046848 -
Aip01g02125 696 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Aip01g02125 696 TIGRFAM PPR: pentatricopeptide repeat domain 240 269 IPR002885 -
Aip01g02125 696 TIGRFAM PPR: pentatricopeptide repeat domain 270 303 IPR002885 -
Aip01g02125 696 TIGRFAM PPR: pentatricopeptide repeat domain 376 409 IPR002885 -
Aip01g02125 696 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 65 587 - -
Aip01g02125 696 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Aip01g02125 696 PANTHER OS09G0411600 PROTEIN 65 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02125 Aip-Chr1 114303788 114308709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02125 65 600 Glycoside Hydrolase AT3G49170 31.238 1.94e-78 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02125 - - aip:107610465 1100.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02125 01 114303788 114308709 Aip01g02125 01 114303788 114308709 ECH