Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02098 ATGAATATCTCGGAACAGCGGTGGGTTTCATTGCTGAGCAAGTGCTGCACCGTGAGGACCACCAAGCAAGTCCACGCTCAAATCTACACAACCGGCTTCCACGACGACCCAATCGTCTTCGGGAAGTTTCTTCTCCACTGCGCAGTTTCCGTATCCGATGCTCTCCACTACGCTCGCCGTCTCTTCCACCACTTCCCTAACCCTGACACCTTCATGTACAACACCCTCATTCGCGCACTCGCTCTCTCAGAAATCCCTCACCATGCCATTCACCCCTTCCTCCAAATGCGCCGCCACGACACCCTTATTCCCGATAGCTTCACTTTCGCTTTTGCGCTCAAAGGACTCGCTAACTGCGGAGACCTCAGAGCTGGTGTTCAGTTGCATTGTCAAGCTCTACGTCATTGCTTTCATACCCATGTTTTTGTTGGGACGACATTGATTAGTATGTATGGCGAATGCGGTGATTCTTGCTCTGCAAGGAAGGTGTTCGAGGAAATGCCAGACCCAAATGTTGTAACTTGGAATGCTGTTGTCACTGCTTGTTTCAGGTGTGGGGATATCTGTGGCGCGCAAGGTGCGTTTGAACAGATGCCTATTAGGAATTTGACCTCTTGGAATGTGATGCTTGCTGGTTACACCAAAGCAGGGGAGCTTGAGTTGGCAAGTAGAGTTTATTCTGAGATGACTCTGAAGGATGGTGTTTCTTGGAGCACCATGATTGTTGGGTTTGCCCACAATGGTTATTTTGATGAAGCTTTTGGGTTTTTCAGGGAGATGCTGCGAGAGGGGATCAGGCCGAATGAGGTGAGCCTTACTGGGGTGTTGTCTGCTTGCGCTCAAGCCGGGGCGTTTGCGTTTGGGAAGATTTTACATGGGTGTATGGAGAAAGCTGGGTTTCTTCACATTGTTTCGGTGAATAATGCTCTCATAGATACCTACTCCAAATGTGGGAATGTGGCCATGGCTAGGTTAGTGTTTGAAAATGTGCCGATGGCGAGGAACATTGTGACATGGACGTCAATGATAGCAGGCCTTGCAATGCAGGGTCATGGAGAAGAGGCAATACGGCTTTTCCATGAGATGGAAGACTCTGGAGTTAGGCCAGATGGTATTACCTTCATCTCTCTTCTATATGCTTGTAGCCATAGCGGCTTGGTTGACCAAGGTTGTGCTTATTTTTCCAAGATGAAGAATATGTATGGTATTGTACCTGCTGTTGAGCATTATGGTTGTATGGTTGATCTGTATGGTCGAGCCGCTCAGTTGCAGAAAGCCTATGAATTTGTATGTCAAATGCCAATTTCACCCAACGCTATCATTTGGAGGACTCTCCTAGGGGCTTGCAGCATTCATGGTAATATCGAGTTGGCAGAGCTTGTGAAAGCAAGGCTTGCTGAGATGGATCCAAACAACTCTGGTGACCATGTACTGCTCTCCAATGTTTATGCTGTAGCAGGGAAATGGAAGGATGTTGCCAGCATAAGAAGAACAATGACTGAAAGGAGCATGAAAAAAACACCTGGTTGGAGCATGATTGAAATTGACAAAGTCATATATGGTTTTGTGGCAGGTGAAAAGCCGAACGAGGTTACAGAAGAGGCTCATAGTAAATTGAGGGAAATCATGCTGAGACTCAGAGCAGAAGTAGGCTATGCGCCACAAGTAAGGAGTGTCTTGCATGATATTGAAGAGGAGGAAAAAGAGGATTCGGTGTCTAAGCACAGCGAGAAGCTTGCTGCAGCTTTTGGAATAGCAAAAGTTCCTAAGGGAAGGGTTTTAAGAATAGTGAAGAACCTGAGGGTTTGTGGGGACTGCCATACTTACATGAAGCTGATTTCTAAAGTTTATGAGGTAGAAATCATTGTGAGAGATAGAAGCCGCTTCCACTCATTCAAAGATGGTTTTTGTTCTTGCAGAGATTATTGGTGA 1932 0.4664 MNISEQRWVSLLSKCCTVRTTKQVHAQIYTTGFHDDPIVFGKFLLHCAVSVSDALHYARRLFHHFPNPDTFMYNTLIRALALSEIPHHAIHPFLQMRRHDTLIPDSFTFAFALKGLANCGDLRAGVQLHCQALRHCFHTHVFVGTTLISMYGECGDSCSARKVFEEMPDPNVVTWNAVVTACFRCGDICGAQGAFEQMPIRNLTSWNVMLAGYTKAGELELASRVYSEMTLKDGVSWSTMIVGFAHNGYFDEAFGFFREMLREGIRPNEVSLTGVLSACAQAGAFAFGKILHGCMEKAGFLHIVSVNNALIDTYSKCGNVAMARLVFENVPMARNIVTWTSMIAGLAMQGHGEEAIRLFHEMEDSGVRPDGITFISLLYACSHSGLVDQGCAYFSKMKNMYGIVPAVEHYGCMVDLYGRAAQLQKAYEFVCQMPISPNAIIWRTLLGACSIHGNIELAELVKARLAEMDPNNSGDHVLLSNVYAVAGKWKDVASIRRTMTERSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHSKLREIMLRLRAEVGYAPQVRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKVPKGRVLRIVKNLRVCGDCHTYMKLISKVYEVEIIVRDRSRFHSFKDGFCSCRDYW 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02098 643 Gene3D Tetratricopeptide repeat domain 385 544 IPR011990 GO:0005515
Aip01g02098 643 Gene3D Tetratricopeptide repeat domain 288 384 IPR011990 GO:0005515
Aip01g02098 643 PANTHER OS01G0913400 PROTEIN-RELATED 13 584 - -
Aip01g02098 643 Pfam PPR repeat family 233 280 IPR002885 -
Aip01g02098 643 Pfam PPR repeat family 334 382 IPR002885 -
Aip01g02098 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 232 IPR002885 -
Aip01g02098 643 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Aip01g02098 643 TIGRFAM PPR: pentatricopeptide repeat domain 205 236 IPR002885 -
Aip01g02098 643 TIGRFAM PPR: pentatricopeptide repeat domain 235 269 IPR002885 -
Aip01g02098 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Aip01g02098 643 Gene3D Tetratricopeptide repeat domain 170 287 IPR011990 GO:0005515
Aip01g02098 643 Gene3D Tetratricopeptide repeat domain 6 169 IPR011990 GO:0005515
Aip01g02098 643 Pfam DYW family of nucleic acid deaminases 551 643 IPR032867 GO:0008270
Aip01g02098 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Aip01g02098 643 Pfam PPR repeat 173 199 IPR002885 -
Aip01g02098 643 Pfam PPR repeat 205 230 IPR002885 -
Aip01g02098 643 Pfam PPR repeat 145 168 IPR002885 -
Aip01g02098 643 Pfam E motif 452 514 IPR046848 -
Aip01g02098 643 PANTHER - 13 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02098 Aip-Chr1 113583719 113585695 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02098 28 643 Glycoside Hydrolase AT3G49170 33.483 8.89e-119 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02098 - - lja:Lj4g3v1632020.2 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02098 01 113583719 113585695 Aip01g02098 01 113583719 113585695 ECH