Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02020 ATGATGATGATGCCTTTCAAGATGAGTGAGATGATGGCAACAATGGGTTCAACCTTAGCAAGCTTCATGTTTGTTTGGGCAATCATACGCCAGTATTGTCCATATGAAGTTAGAAGGTTCTTTGAGAAATACACAGACAGAATTATGGGCTATTTCTACCCTTATATAAGAATCTCCTTCCATGAATTCTTGGGTGATAGGCTCAAGAGAAGTGAGGCTTATGCTGCTGTTGAGGCATACCTCAGTGCCAACACATCAAAGAGTGCAAAGAGACTCAAAGCTGAGATGGGAAAAGATAGCACCAACTTGGTTCTCACCATGGACGAGTATGAGAGAGTCACTGATGATTATGAGGGTGCAAAAGTTTGGTGGTTATCTAGCAAGGTTGCGTCACCACCAAGGTCCATGTCATACTACCCTGAACAAGAGAAGAGGTTCTACAAGCTCAGCTTCCACATGAAGTATAGGGACTTGATCACAAGTTCGTATTTGGAACATGTTATGAGGGAAGGGAAGGAGATTCGGTTGAGGAATCGGCAGAGGAAGTTGTACACAAATAGCCCTGGATACAAGTGGCCAAGTTACAAGCAAACAATGTGGAGCCACATTGTGTTTGAGCACCCTGCAACCTTTGAGACAATGGCTATGGATTCTGAGAAGAAGAAGGAGATCATTGAGGATTTGGTTACTTTTAGCAAGAGCAAAGATTTTTATGCAAGGATTGGGAAAGCTTGGAAGAGGGGTTACCTCCTTTATGGCCCTCCTGGTACTGGAAAATCCACAATGATTGCAGCAATGGCGAATTTGTTAGGATATGATGTGTATGACTTGGAGCTTACGGCAGTTAAGGACAACACTGAGCTGAGGAAGCTCTTGATTGAGACGACGAGTAAGTCTATAATTGTTATTGAGGACATTGATTGCTCTCTTGATCTTACAGGGCAGAGGAAGAAGAAAGGCGGCGACAAGTTGTCGGATGATGAGAGTGAGAAGGTGAGCTTAGAACTTAGGAAAGAAGGGAAGGAAGATGGAGGCTGTGGCAGCAGCAAGGTGACGCTTTCGGGGCTATTGAATTTCATTGATGGGATATGGTCTGCTTGTGGTGGGGAGAGGTTGATTGTGTTCACTACTAACTATGTGGAGAAGCTTGACCCGGCGCTGATTCGAAGGGGCAGGATGGACAAGCACATAGAGTTGTCCCATTGCAGCTTTGATGGATTCAAAGTGCTTGCCAAGAATTACTTGAAGCTTGAAACTCATCCCATGTTCGACACCATTCGGAAGCTGATTGGGGAGTTCAAGATCACTCCAGCCGATGTTGCTGAGAACCTTATGCCTAAGTCTCCACTGGATGATGCAGACAAGTGTCTTTCTTGCTTGATTGAATCACTTGAGGAAGCTGCTGCTGCTATGAAAGCTGAGGAACTGAGGCAGAGCTGCGCGAAAAAGGAAGATGAGGAACTGAAGCATGCCAATGATCACATTAAGGAAGATGAGGGACTAAAGCACACAAATCACACTAAGGAAAATGGTGAGGTATGGGAGGACTTAGAACCTGCTCAAGCAAAAAACCTAAGCCTATAG 1584 0.4476 MMMMPFKMSEMMATMGSTLASFMFVWAIIRQYCPYEVRRFFEKYTDRIMGYFYPYIRISFHEFLGDRLKRSEAYAAVEAYLSANTSKSAKRLKAEMGKDSTNLVLTMDEYERVTDDYEGAKVWWLSSKVASPPRSMSYYPEQEKRFYKLSFHMKYRDLITSSYLEHVMREGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFETMAMDSEKKKEIIEDLVTFSKSKDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLGYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKGGDKLSDDESEKVSLELRKEGKEDGGCGSSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSHCSFDGFKVLAKNYLKLETHPMFDTIRKLIGEFKITPADVAENLMPKSPLDDADKCLSCLIESLEEAAAAMKAEELRQSCAKKEDEELKHANDHIKEDEGLKHTNHTKENGEVWEDLEPAQAKNLSL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02020 527 PANTHER ATP BINDING PROTEIN 9 496 - -
Aip01g02020 527 PANTHER BCS1 AAA-TYPE ATPASE 9 496 - -
Aip01g02020 527 MobiDBLite consensus disorder prediction 484 516 - -
Aip01g02020 527 Gene3D - 205 396 IPR027417 -
Aip01g02020 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 449 IPR027417 -
Aip01g02020 527 ProSitePatterns AAA-protein family signature. 371 390 IPR003960 GO:0005524|GO:0016887
Aip01g02020 527 MobiDBLite consensus disorder prediction 484 527 - -
Aip01g02020 527 SMART AAA_5 245 403 IPR003593 -
Aip01g02020 527 CDD AAA 246 400 - -
Aip01g02020 527 Gene3D - 397 458 - -
Aip01g02020 527 Pfam Domain associated at C-terminal with AAA 34 126 IPR025753 -
Aip01g02020 527 Pfam ATPase family associated with various cellular activities (AAA) 250 399 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02020 Aip-Chr1 108211992 108214379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02020 210 426 Miscellaneous Gene Families AT5G58870 27.556 1.10e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02020 - - gmx:100798176 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02020 01 108211992 108214379 Aip10g02935 10 124526662 124529630 ECH
Aip01g02020 01 108211992 108214379 Aip01g02020 01 108211992 108214379 ECH