Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip01g01984 | ATGGAGCCAATAAGCACACAAAGGCATGCCCAGCAACCAGGCTCACACGCCTGGCGGCCAATCCACATGCCCGACGGCCTCCTCCATTCATTCCTCACATGCCTAGTGGCCATACCATACGCTCGGCGGTCCCTGCTTCTCCTTTTCATCCGCCTCCAAGCTTCCAAGACACACGCCCGGCATGCACCACAGTCTAGTCGGCAATCGCCTCGAATTGCTCGGGATCGGTCATCTGTAGATTTAGACTACAACGACGTAGCCCCTCTCCACGCAATTGGGCTAGAAGTGCAAGCGCCAATGGAGGAGGCTGATAATGATGGCGAGGACGATAATGACGATGATAGCGATGGTGATGACGATGCAGGTGGTGTAGAAGGTGCAAAAGAGACGAAAGGTGCGAATGAGGTAGAAGGTGCGGAAAATTCCCATACTTCAGATGTACATGGTAAAGGATATAACTTAAGGATTGCCCAACAGGGTTTTTCCGAATCTCCGATTAGTCGAAAATCCAATACAGCAGTTTCAGCCATGGTTTCTGATTCAGTTCCCGCCGCTCTTATTCCTTCAGCTGCAAACACTAAGAACCTCGGCAAGAAGAAGAGGACCAACAGGTCTGCAAAATTGAAACAGAACAAAATTGAAGCGCGTCGTGAGCAATGGTTATCCCAAGGTTCTGTCAAGAGCAAGGGGTGCAAGGATGTAATCGACAGTGATGGCCACGAGCTGCCATTGTCAGCCGGGAATCATGGCAAGCGTCCGCTGGAGCAGTTGGAGACTAGGCACAGGGTGGAAGAAGACGACGGGTTGATCCATCAACACAGCGATTCGGAATCACCAGCTAACAGCCCCACAGGCAATGATTCTGGGACGAATTTCACTGGAAGCAGTGGCAGCAGTAGCGGGAGCAGTAGCAGTAGGAGCAGCAGTAGTTACAGCAGCGCTGGGTGTTGCTCTGGAAACATAACAGAAGAAGATGACGATGAAGAAGAGGAAGGAGGAGGGGAAGAAGAAGGTGATGATGGTTGCTTGGATGATTGGGAGGCTGTGGCAGATGCTCTAGCCGCCAATGACAAGCGCCAGAACCCTTGTTCTGATTCACCTCCTTCACACGGCGATGAATCCGTTGTGCAAATGGCTTCATCGAACTGTGAAGATCCAAACAGGGGGCCGAATTCAGGGTCTCGGAATTTGAAACCTGAGAGTGCTAATTTGGTTCCTTGGACTGGTAATTGCCGAGCTTGGAGGGCTGATGATGCATTTCGACCCCAGAGTTTGCCCAATTTGTCCAAGCAGCACAGCTTGCCAATCTCCGACCGACGTTGCGGTGGTGGTGTCCTTTGGAGTCGCTCTGCTATGCCATCATCATGTCCTATATGCTGTGAGGATCTCGATTTGACAGACACGAGTTTCTTGCCTTGCTTGTGTGGCTTTCGGCTTTGCCTCTTTTGCCATAAGAGGATTCTTGAAGAAGATGCTCGCTGCCCTGGCTGCAGGAAGCCTTATGAGTGCGATAACTAA | 1518 | 0.5132 | MEPISTQRHAQQPGSHAWRPIHMPDGLLHSFLTCLVAIPYARRSLLLLFIRLQASKTHARHAPQSSRQSPRIARDRSSVDLDYNDVAPLHAIGLEVQAPMEEADNDGEDDNDDDSDGDDDAGGVEGAKETKGANEVEGAENSHTSDVHGKGYNLRIAQQGFSESPISRKSNTAVSAMVSDSVPAALIPSAANTKNLGKKKRTNRSAKLKQNKIEARREQWLSQGSVKSKGCKDVIDSDGHELPLSAGNHGKRPLEQLETRHRVEEDDGLIHQHSDSESPANSPTGNDSGTNFTGSSGSSSGSSSSRSSSSYSSAGCCSGNITEEDDDEEEEGGGEEEGDDGCLDDWEAVADALAANDKRQNPCSDSPPSHGDESVVQMASSNCEDPNRGPNSGSRNLKPESANLVPWTGNCRAWRADDAFRPQSLPNLSKQHSLPISDRRCGGGVLWSRSAMPSSCPICCEDLDLTDTSFLPCLCGFRLCLFCHKRILEEDARCPGCRKPYECDN | 505 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip01g01984 | 505 | MobiDBLite | consensus disorder prediction | 101 | 120 | - | - | |
| Aip01g01984 | 505 | MobiDBLite | consensus disorder prediction | 321 | 342 | - | - | |
| Aip01g01984 | 505 | CDD | mRING-HC-C4C4_CNOT4 | 456 | 499 | IPR039515 | - | |
| Aip01g01984 | 505 | Pfam | RING/Ubox like zinc-binding domain | 456 | 502 | - | - | |
| Aip01g01984 | 505 | MobiDBLite | consensus disorder prediction | 253 | 273 | - | - | |
| Aip01g01984 | 505 | SUPERFAMILY | RING/U-box | 454 | 504 | - | - | |
| Aip01g01984 | 505 | MobiDBLite | consensus disorder prediction | 192 | 342 | - | - | |
| Aip01g01984 | 505 | MobiDBLite | consensus disorder prediction | 357 | 402 | - | - | |
| Aip01g01984 | 505 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 448 | 505 | IPR013083 | - | |
| Aip01g01984 | 505 | ProSiteProfiles | Zinc finger RING-type profile. | 456 | 498 | IPR001841 | - | |
| Aip01g01984 | 505 | MobiDBLite | consensus disorder prediction | 359 | 402 | - | - | |
| Aip01g01984 | 505 | MobiDBLite | consensus disorder prediction | 121 | 144 | - | - | |
| Aip01g01984 | 505 | MobiDBLite | consensus disorder prediction | 57 | 77 | - | - | |
| Aip01g01984 | 505 | MobiDBLite | consensus disorder prediction | 274 | 319 | - | - | |
| Aip01g01984 | 505 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 185 | 501 | - | - | |
| Aip01g01984 | 505 | MobiDBLite | consensus disorder prediction | 93 | 151 | - | - | |
| Aip01g01984 | 505 | PANTHER | CCR4-NOT TRANSCRIPTION COMPLEX RELATED | 185 | 501 | IPR039780 | GO:0004842|GO:0030014 | |
| Aip01g01984 | 505 | MobiDBLite | consensus disorder prediction | 58 | 72 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip01g01984 | Aip-Chr1 | 106094545 | 106099049 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip01g01984 | - | - | ahf:112695276 | 624.009 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aip01g01984 | 01 | 106094545 | 106099049 | Aip01g01984 | 01 | 106094545 | 106099049 | ECH |