Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01967 ATGAGCGCGGAAGAGGAAGGTGGCACGGATGAACCGACAGCGGAGGATGACTTCTCGATGTGCACCTCTGAGTTTTCCATGTGCGCCTCTGGATTTTCGACATGGCGCAAACGTGACTTCTCTACTTCTTTGAGTGTTATTGAGGGAATATTGTTGAAGAAGAAGAGGGTGGTGGACTGGTGGAGGCCATCAACGGAGAAGTCAAAGACAATAGCGGCTCACTGGAAAACAAGCTTCTACATCTTCCGAACCCTATCCTCCCGCCAGAGACACCAGATCCATCTCTACGTTCACGCTATTCTCCAATGGAACAAGCGCATGAATCTCACCGCAGTCAAAGACGCCGATGAAGTCATGGAGAGGCACGTCGAGGACTCGCTCGCGATCCTCCCTCCTCTTAGGGATTGCTACCGCACGCGCTGCGGCGGCGCGCCGCCACATGAGAAGCTTAGCCTCGTGGACGTTGGAACAGGTGCTGGTCTTCCCGGAGTTGTTTTGGCCATAGCTTGTCCAGAATGGGAAGTTACACTGATGGAGTCCATGAACAAGAGATGCGTATTCTTGGAGCATGTTGTTGGAATCATCGGTTCATCAAATATCCAGATAGTAAGAGGAAGAGCAGAGAGTTTGGGGCAGAATCATTGCTTCAGAGAGAAATTCGACATAGCAGTGGCTAGGGCAGTTGCAGAAATGAGAGTGTTAGCTGAGTATTGTCTTCCACTGGTTCGTGTTGGCGGATTGTTTATTGCTGCCAAGGGTCATGACCCTGAGGATGAAGTTAAGAAAGCTGAAAGTGCCATCCAGAAGATGGGTGCTTCTCTATTGCAAGTGTGCTCAGTTGATTCTCGAAGTCCATATGGTCAACGGACTGTTGTCATATGCTCAAAGGATCGTTCCACTCCGATGAAATATCCCCGTGATCCAGTTATGAAAGAGCCAAAATATCTTGTCCCCTTCTATTTGATAAACACCCTATACATGAAGAAAAAGACACAAGCTACAGAAGTAGCAGAAGCTAAGCAAAGGCACGAAGCACTGAAGCATCAAAAGCAAAGGCATGCACGAAGCGTTGAAGCAGCAGCGATAGTGATGGCTCTGACGGAAAAGCACGATGATGGCTCAGGGTTAGGGACTCACAATGTTGGCTAA 1149 0.49 MSAEEEGGTDEPTAEDDFSMCTSEFSMCASGFSTWRKRDFSTSLSVIEGILLKKKRVVDWWRPSTEKSKTIAAHWKTSFYIFRTLSSRQRHQIHLYVHAILQWNKRMNLTAVKDADEVMERHVEDSLAILPPLRDCYRTRCGGAPPHEKLSLVDVGTGAGLPGVVLAIACPEWEVTLMESMNKRCVFLEHVVGIIGSSNIQIVRGRAESLGQNHCFREKFDIAVARAVAEMRVLAEYCLPLVRVGGLFIAAKGHDPEDEVKKAESAIQKMGASLLQVCSVDSRSPYGQRTVVICSKDRSTPMKYPRDPVMKEPKYLVPFYLINTLYMKKKTQATEVAEAKQRHEALKHQKQRHARSVEAAAIVMALTEKHDDGSGLGTHNVG 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01967 382 TIGRFAM rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 95 294 IPR003682 GO:0005737|GO:0006364|GO:0008649
Aip01g01967 382 Gene3D Vaccinia Virus protein VP39 64 317 IPR029063 -
Aip01g01967 382 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 79 306 IPR029063 -
Aip01g01967 382 Hamap Ribosomal RNA small subunit methyltransferase G [rsmG]. 82 293 IPR003682 GO:0005737|GO:0006364|GO:0008649
Aip01g01967 382 CDD AdoMet_MTases 152 249 - -
Aip01g01967 382 Pfam rRNA small subunit methyltransferase G 90 280 IPR003682 GO:0005737|GO:0006364|GO:0008649
Aip01g01967 382 Coils Coil 329 356 - -
Aip01g01967 382 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 65 311 IPR003682 GO:0005737|GO:0006364|GO:0008649
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01967 Aip-Chr1 105020249 105028552 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01967 K03501 - gmx:100818428 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01967 01 105020249 105028552 Aip01g01967 01 105020249 105028552 ECH