Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01961 ATGTTTCACCGCGATCACTCCCCATGCCTCTTCCTCCTCCTCCTTCTACTCTCCACTTTATGCATCTCATCCATCTCCCACTCACAACAATCCACTTGGGCTTCCAAGAAAATGCGCATGAGAGAGAAAGTTCGCACCATGTTTTACCATGCCTATGACAACTATATGACTTATGCATTTCCGCATGATGAGCTAAAGCCACTCTCCAAAACGTACACTGACTCCTTAAGTGAGCTAGGAAATTTGAAGCTTGAACATTTACCTCAAGACTACAATGGATCTGCCCTTACACTTATCGAATCGCTGTCAAGCCTTGTTATTATGGGAAACAATACTGAATTTGAGAAGGCAGTGCTCTGGCTTTCCGAAAATCTAAAATTTGACGTTGACGCACGCATAAATCTTTTTGAGTGCAACATAAGAGTTCTAGGAGGACTTGTCTCTGCTCATTTACTTGCATCTGATTCTTCAAAGAAGTTGTTTCAAGGGACTTACAATAATCAGCTCCTATTTCTGGCTGAAGATTTAGGGAAACGCTTTCTACCGGCATTCGATACGCCCACTGGATTGCCATATGCGTGGATTAACTTAAAGTATGGAGTAATGGAGAATGAGACTACAGAAACAAGCACTTCAGGGTGTGGTTCACTGATTCTTGAAATGGGTGCTTTATCAAAAGTGACCGGTGACCCTAGGTATGAATCTGCAGCTTTGCGAGCCCTTCGTAAGCTATGGAGCATGCAGAGTTCATTACGTTTATTTGGAACCACATTAGATGTGGAAACTGGGGAATGGATTGAATTTTCATCAGGTATTGGAGCAGGGGTTGATTCCTTTTATGAGTATCTACTTAAAGCTCATATCCTATTCGGGAAGGAGGACTTTTGGAGAATGTTTCATTCTGCTTATGTTGCTGTGCAGAAATATTTCAGACATGGTCCTTGGTATCATGAAGCCGATATGAGAACAGGAAAAGCAACTTACTGGCAGCTTACAAGTCTTCAAGCATTTTGGCCTGGTCTACAGGTTCTTATTGGGGATATCACAGCCGCCAATTCATCTCACCGTGAGTTCTTCCATGTGTGGAAGAGATTTGGTGTGCTACCTGAGCGGTATTTGCTGGACCACCGGATGATTCACCCTACTGAAAAATATTATCCGTTACGTCCTGAACTCGCCGAGTCAACATTCTATTTATATCAAGCAACTAAAGATCCATGGTATATTGAAGTGGGTGAAACAATAGTTAATTCCCTTAATCTATACACCAAAATAGAAGGTGGTTTTGCAAGCGTCAAGGATGTGACAACTATGCAGTTGGAAGATCATCAACATAGTTTTTTTCTTGCTGAAACGTGCAAATATTTATATCTCCTATTTGATGATTCGTTTGTACATGAGACTAACTATGTATTTACCACCGAAGGGCATCCCCTTCCTGTACTCAGCGCATGGCATGAGAAGCTTCCAGAAACTTATATTCCTACTAATTGGACTTTCATGAAGAGACAACCAGAAGCGAGTCGAATCAGTTCAATGTCTTTGCAAGTTTGCCCTGCCATCACATTGAAATCAGGCCAACACATTGAGAGTGCATGCCACATCCCTGATGCGCGTAGTGATTATAGATGTTTGACTGACGAAGATTGTGGAGTTGATTCCACGACATGTGCACGAAGATCTTGTAGCATGGCTGGTTATTGTGGATTATGGATCTTTTAA 1722 0.4199 MFHRDHSPCLFLLLLLLSTLCISSISHSQQSTWASKKMRMREKVRTMFYHAYDNYMTYAFPHDELKPLSKTYTDSLSELGNLKLEHLPQDYNGSALTLIESLSSLVIMGNNTEFEKAVLWLSENLKFDVDARINLFECNIRVLGGLVSAHLLASDSSKKLFQGTYNNQLLFLAEDLGKRFLPAFDTPTGLPYAWINLKYGVMENETTETSTSGCGSLILEMGALSKVTGDPRYESAALRALRKLWSMQSSLRLFGTTLDVETGEWIEFSSGIGAGVDSFYEYLLKAHILFGKEDFWRMFHSAYVAVQKYFRHGPWYHEADMRTGKATYWQLTSLQAFWPGLQVLIGDITAANSSHREFFHVWKRFGVLPERYLLDHRMIHPTEKYYPLRPELAESTFYLYQATKDPWYIEVGETIVNSLNLYTKIEGGFASVKDVTTMQLEDHQHSFFLAETCKYLYLLFDDSFVHETNYVFTTEGHPLPVLSAWHEKLPETYIPTNWTFMKRQPEASRISSMSLQVCPAITLKSGQHIESACHIPDARSDYRCLTDEDCGVDSTTCARRSCSMAGYCGLWIF 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01961 573 SUPERFAMILY Seven-hairpin glycosidases 38 494 IPR036026 GO:0004571|GO:0005509|GO:0016020
Aip01g01961 573 PRINTS Glycosyl hydrolase family 47 signature 47 67 IPR001382 GO:0004571|GO:0005509|GO:0016020
Aip01g01961 573 PRINTS Glycosyl hydrolase family 47 signature 132 150 IPR001382 GO:0004571|GO:0005509|GO:0016020
Aip01g01961 573 PRINTS Glycosyl hydrolase family 47 signature 182 201 IPR001382 GO:0004571|GO:0005509|GO:0016020
Aip01g01961 573 PRINTS Glycosyl hydrolase family 47 signature 273 290 IPR001382 GO:0004571|GO:0005509|GO:0016020
Aip01g01961 573 PRINTS Glycosyl hydrolase family 47 signature 330 346 IPR001382 GO:0004571|GO:0005509|GO:0016020
Aip01g01961 573 PRINTS Glycosyl hydrolase family 47 signature 387 411 IPR001382 GO:0004571|GO:0005509|GO:0016020
Aip01g01961 573 PRINTS Glycosyl hydrolase family 47 signature 446 466 IPR001382 GO:0004571|GO:0005509|GO:0016020
Aip01g01961 573 PANTHER ALPHA-MANNOSIDASE I MNS5 19 572 - -
Aip01g01961 573 Pfam Glycosyl hydrolase family 47 47 480 IPR001382 GO:0004571|GO:0005509|GO:0016020
Aip01g01961 573 Gene3D - 28 491 IPR012341 GO:0005975
Aip01g01961 573 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 19 572 IPR044674 GO:0004571|GO:1904380|GO:1904382
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01961 Aip-Chr1 104347238 104352594 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01961 12 571 Glycoside Hydrolase AT1G27520 77.265 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01961 K10084 - gmx:100793674 1043.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01961 01 104347238 104352594 Aip01g01961 01 104347238 104352594 ECH