Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01934 ATGCTCATTTGCTACACAAGCAACAAATTCCCCACTGACTATATTCCCACAGTGTTTGATAATTTCAGTGCAAATGTGGTAGTTGAAGGCACAACTGTCAATTTAGGCCTTTGGGACACTGCTGGGCAAGAGGACTACAATAGATTGAGGCCTCTGAGCTACAGAGGCGCAGATGTATTTGTATTGGCTTTCTCTCTTGTTAGTGGCGCGAGCTATGAGAATGTCTTGAAGAAGTGGATCCCGGAGCTGCAGCATTTTGCCCCTGGTGTTCCAGTGGTACTAGTTGGCACCAAATTAGATCTTCGCGAAGACAAGCACTATCTAGCCGATCATCCCAGTCTGGTGCCTGTGACTCGTGAGCAGGGGGAGGAACTACGGAAACGAATAGGAGCTAGCTATTATATTGAGTGCAGCTCAAAAACTCAGCAGAATGTGAAGGCTGTTTTCGATGCGGCAATCAAGGTGGTGATCAAGCCTCCACAGAAGCAACAAGAGAAGAAGAAGAAACCGCGTCCCGGGTGTCTATTGTAA 531 0.4727 MLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSGASYENVLKKWIPELQHFAPGVPVVLVGTKLDLREDKHYLADHPSLVPVTREQGEELRKRIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQQEKKKKPRPGCLL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01934 176 PANTHER GTPASE, PUTATIVE-RELATED 1 176 - -
Aip01g01934 176 PANTHER RHO FAMILY GTPASE 1 176 IPR003578 GO:0005525|GO:0007264
Aip01g01934 176 ProSiteProfiles small GTPase Rab1 family profile. 1 176 - -
Aip01g01934 176 CDD Rop_like 1 157 - -
Aip01g01934 176 Gene3D - 1 175 IPR027417 -
Aip01g01934 176 ProSiteProfiles small GTPase Rho family profile. 1 156 - -
Aip01g01934 176 TIGRFAM small_GTP: small GTP-binding protein domain 2 150 IPR005225 GO:0005525
Aip01g01934 176 SMART ras_sub_4 1 159 - -
Aip01g01934 176 PRINTS Transforming protein P21 ras signature 26 48 - -
Aip01g01934 176 PRINTS Transforming protein P21 ras signature 88 101 - -
Aip01g01934 176 PRINTS Transforming protein P21 ras signature 9 25 - -
Aip01g01934 176 PRINTS Transforming protein P21 ras signature 134 156 - -
Aip01g01934 176 Pfam Ras family 1 156 IPR001806 GO:0003924|GO:0005525
Aip01g01934 176 SMART rho_sub_3 1 159 IPR001806 GO:0003924|GO:0005525
Aip01g01934 176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 156 IPR027417 -
Aip01g01934 176 ProSiteProfiles small GTPase Ras family profile. 1 176 IPR001806 GO:0003924|GO:0005525
Aip01g01934 176 SMART rab_sub_5 2 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01934 Aip-Chr1 103281661 103284914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01934 1 171 EF-hand Containing Proteins AT3G63150 29.143 4.18e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01934 K04392 - pop:7475516 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01934 01 103281661 103284914 Aip01g01934 01 103281661 103284914 ECH
Aip01g01934 01 103281661 103284914 Aip01g01934 01 103281661 103284914 PCT