Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01931 ATGGGAGACAAACGTAAGAGAGGTCGGAAATCCAAAACCCCCACCTCCGCCTCCGAAACCCTAGGCTCACCTTCCACCACCGCCCCTAACGCCGCCACCGCCGCCCCTTCCACCATTGACGACGTCTTCTCCGTCGCCAACGTCAACCTCATGGACACTACTGCTTCCCCGCACCAACGTCGCCGCCCTGGCCGCCCCAAGAAAGTCCCCCACCAGTCCGACAGGCCGGGACGCCGCCAATCCTCCCGTCCCCCAGTCGATGCCAACGGCGCCGTCGAGGTCCCCCCGGCGGCTGAGGCAATGGAGGAGGACCCCGTGTGGGAGAACGTAGTTCCTGGTCGAGTGGTGCCGGCGATGGACTCGGTGGTGAAGGTTTTCTGCGTTCACACGGAGCCGAATTTCTCTCTGCCGTGGCAGCGGAAGAGGCAGTACAGCTCTAGCAGCAGCGGGTTCGTGATCGGCGGGAGGAGGTTGCTGACGAACGCTCATTCGGTGGAGCATTACACGCAGGTTAAGGTCAAGAAGCGTGGCTCGGATACTAAGTACTTAGCCACAGTTCTAGCCATTGGAACCGAGTGCGACATTGCCATGCTCGCAGTTGATGATGATGAGTTCTGGCAAGGGATGTCACCTGTAGAGTTTGGGAATTTGCCTGCACTTCAGGATGCAGTCACTGTTGTGGGATACCCAATTGGTGGTGATACTATTTCCGTAACCAGTGGTGTTGTATCACGCATTGAGATCCTATCTTATGTCCATGGTTCGACTGAACTTCTAGGTTTACAGATAGATGCTGCTATAAATTCTGGCAATTCCGGTGGACCTGCATTTAATGATAAAGGAAACTGTGTGGGCATTGCATTTCAGTCCCTCAAGCACGAAGATGCGGAGAATATAGGTTATGTTATTCCAACACCAGTGATCAATCATTTCATCCAGGATTATGAGAGAAATGGAAGATACACTGGGTTCCCTGTTCTTGGGGTTGAGTGGCAGAAGATGGAAAATCCTGATCTAAGAATGGCAACAGGCATGAGAACTGACCAGAAAGGTGTGCGGATTAGAAGAGTTGATCCTACTGCTCCAGAATCCAAGGTTTTGAAGGCATCAGATGTTATTCTTAGCTTTGATGGGGTTGATATTGCCAATGATGGAACAGTTCCATTTCGCCATGGGGAGCGCATTGGTTTCAGTTACCTCATATCCCAGAAATATACTGGTGATAATGCTGTAATTAAAGTATTAAGAAATTCAGAGGTCCTCAATTTTGACATTAAACTCGATAGTCATAGAAGACTAATTCCAGCACACACCAAGGGCAGGCCTCCTTCATATTATATCATTGCAGGATTTGTTTTTACGACCGTTTCAGTTCCATATCTTCGATCTGAGTATGGAAAGGATTATGAGTATGAAGCTCCTGTCAAACTTTTGGATAAACTGCTGCATTCAATGCCGCAATCGCCAGATGAACAACTTGTTGTGGTTTCTCAGGTGTTGGTGGCTGATATCAATATTGGATATGAAGAGATTGTCAACACCCAGGTCCTTGCTTTTAATGGTAAACCTGTGAAAAATCTCAAGAGCTTGGCCAATATGGTAGAGAGCTGCAACGATGAATACCTGCAATTTAATCTAGACTACGAACAGATTGTGGTTCTTCGCACAAAGACTGCAAAGGCAGCTACTCTAGACATACTTTCAACCCACTGCATTCCCTCAGCAATGTCCGATGATCTGAAGTCATGA 1749 0.4883 MGDKRKRGRKSKTPTSASETLGSPSTTAPNAATAAPSTIDDVFSVANVNLMDTTASPHQRRRPGRPKKVPHQSDRPGRRQSSRPPVDANGAVEVPPAAEAMEEDPVWENVVPGRVVPAMDSVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVIGGRRLLTNAHSVEHYTQVKVKKRGSDTKYLATVLAIGTECDIAMLAVDDDEFWQGMSPVEFGNLPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGNCVGIAFQSLKHEDAENIGYVIPTPVINHFIQDYERNGRYTGFPVLGVEWQKMENPDLRMATGMRTDQKGVRIRRVDPTAPESKVLKASDVILSFDGVDIANDGTVPFRHGERIGFSYLISQKYTGDNAVIKVLRNSEVLNFDIKLDSHRRLIPAHTKGRPPSYYIIAGFVFTTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLVADINIGYEEIVNTQVLAFNGKPVKNLKSLANMVESCNDEYLQFNLDYEQIVVLRTKTAKAATLDILSTHCIPSAMSDDLKS 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01931 582 Pfam PDZ domain 434 579 IPR041517 -
Aip01g01931 582 MobiDBLite consensus disorder prediction 1 35 - -
Aip01g01931 582 Gene3D - 433 582 IPR046449 -
Aip01g01931 582 PANTHER PROTEASE DO-LIKE 9 1 581 - -
Aip01g01931 582 Gene3D - 108 205 IPR043504 -
Aip01g01931 582 Gene3D - 323 432 IPR036034 GO:0005515
Aip01g01931 582 SUPERFAMILY Trypsin-like serine proteases 117 320 IPR009003 -
Aip01g01931 582 MobiDBLite consensus disorder prediction 50 100 - -
Aip01g01931 582 Pfam Trypsin-like peptidase domain 149 286 - -
Aip01g01931 582 Pfam PDZ domain 325 427 IPR001478 GO:0005515
Aip01g01931 582 MobiDBLite consensus disorder prediction 14 34 - -
Aip01g01931 582 Gene3D - 206 316 IPR043504 -
Aip01g01931 582 PRINTS HtrA/DegQ protease family signature 150 162 IPR001940 GO:0004252|GO:0006508
Aip01g01931 582 PRINTS HtrA/DegQ protease family signature 178 198 IPR001940 GO:0004252|GO:0006508
Aip01g01931 582 PRINTS HtrA/DegQ protease family signature 220 244 IPR001940 GO:0004252|GO:0006508
Aip01g01931 582 PRINTS HtrA/DegQ protease family signature 257 274 IPR001940 GO:0004252|GO:0006508
Aip01g01931 582 PRINTS HtrA/DegQ protease family signature 366 378 IPR001940 GO:0004252|GO:0006508
Aip01g01931 582 CDD PDZ_serine_protease 325 425 - -
Aip01g01931 582 PANTHER - 1 581 - -
Aip01g01931 582 SUPERFAMILY PDZ domain-like 350 432 IPR036034 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01931 Aip-Chr1 102997193 103002458 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01931 K25897 - gmx:100791040 962.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01931 01 102997193 103002458 Aip01g01931 01 102997193 103002458 ECH