Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01927 ATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAATTGATGATGAGTGATTATACAGTGGAGATGATAAATGATGGGCTAAGTGAATTCAATGTGGAGTTTCATGGCCCCAAAGAAAGCCTCTATGAAGGCGGAGTCTGGAAAATTCGCGTGGAGCTGCCCGACGCATATCCATACAAATCCCCCTCTGTCGGCTTTGTTAACAAAATATTCCATCCAAATGTTGATGAGTTATCTGGCTCTGTATGTTTGGATGTCATCAATCAATCATGGAGTCCAATGTTTGATCTTCTAAATGTCTTTGAAGTATTCCTACCACAACTATTGCTTTATCCGAATGCTTCAGATCCTCTCAATGGTGATGCAGCATCATTAATGATGAAGGATAAAAAGCTGTATGACGAAAAAGTTAAAGAGTACTGTGAGCGGTATGCAAAGAAGGAACATATAAGCAAATCAAAAGCTGAAGAAGAGAGTGATGAGGATGATATCAGTGAAGAAGAATGTGGGTCAAGTGATGATGACATTCCTGGACATGCTGATCCCTAA 555 0.3982 MSSPSKRREMDVMKLMMSDYTVEMINDGLSEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSVGFVNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNASDPLNGDAASLMMKDKKLYDEKVKEYCERYAKKEHISKSKAEEESDEDDISEEECGSSDDDIPGHADP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01927 184 Gene3D Ubiquitin Conjugating Enzyme 1 162 IPR016135 -
Aip01g01927 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Aip01g01927 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 184 - -
Aip01g01927 184 SMART ubc_7 4 148 - -
Aip01g01927 184 CDD UBCc 7 143 IPR000608 -
Aip01g01927 184 Pfam Ubiquitin-conjugating enzyme 11 142 IPR000608 -
Aip01g01927 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Aip01g01927 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 184 - -
Aip01g01927 184 MobiDBLite consensus disorder prediction 150 184 - -
Aip01g01927 184 SUPERFAMILY UBC-like 3 150 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01927 Aip-Chr1 102835446 102838659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01927 3 117 Miscellaneous Gene Families AT3G17000 23.577 3.22e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01927 K10576 - zju:107418449 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01927 01 102835446 102838659 Aip01g01927 01 102835446 102838659 ECH