Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01923 ATGGAGACCCTGACGGCCACACCCGACACGGGCACGACCGTGCGTGTCTCCAACATCCCCATATCCGCCACCGCCACCGACCTCGTCCACTTCCTCCAAGCCACACTGGGACCCTCCTCCGTCTTCGCCCTTGAGATCTTCACCGATCAGAACAACGCCACCTGGAACTCCCGCTCCTTCGGCCGCGTTCAGTTCGAGACACCCGACGCCAAAACCAAGGCCCTCTCCCTCTCCCACCACCCCCGCGACGACCGCATGAGTGTGCTGCACACCTGGGAACGTGTCAGGGGCTGGCCCATGCCCGAGAGGAGGAAGATCGAGTTCTGGGTCCCACATGATGGACAGTGCTACAAGCTCGAGATTTGGTTCGAGGATATTCTGGAGGCCAATGGGTACTGTTTGGGTGGTGGTGACAAACTCAATGCCCTCCTCTTGAAGCTGAAATATGCACCAAAGATTTATCAGAAAAAATTTGGGTCAAATGTGTCGTCGAAGTTTAATGCTGCTAATGGTAGGTACCATTTCTGCAAGGAGGATTATGATTTTACTTGGGTTCGTACGACAGACTTCTCAGCTATGAAGGCACTTGGACATTCTACATCGTTTTGTTGGGAGATTGAGGAAGGACCATTCAATCAGGATATTTTTCGTAGTTTCCCGCTCTACAGAGAAATTCTGAAAGATCTAACTCTAGAGGAGGGGGAAGAGTATTGTTCTCCGGCAGAAATAGTTCCACTTGTAAACTGTCTTTCTACAGATACTAAGATACCGTATGAGACCCTTTTCCAATTGAATTCCCTCATTCATACCCAGAAAATCAGTCTTGCATCAGTAGATAGTGATTTCATTGACTTGCTAGGAAGTTTAGATGAAGAAACCAAAGCCCTGATTTTTCAGAAATTGCACAAGCTGAATTCCACTTGTTATGAACCTCAAAAATTTGTGAATACTCAATTACATGTGCTAAGTAGTAAGGGTAGAGGTCCTCATCCATCATCGCAGAAAAGGCTGATGGAGAATAACATAATGAGCTGTCATAGAGCCTTGATTACCCCAACAAAGATTTATTGTCTTGGTCCTGAGCTTGAAACCTCAAATCATGTGGTAAAGCATTTTTCTCAATTTGCTTCAGATTTCATGAGGATCACTTTTGTTGATGAGAACTGGGGTAAGCTTCCAGTTAATGCTGTATCAGCTAGTTTGCAAAAGGGAATCTTTTCAGAACCTTTTAGAACTAAAATATATGAGCGGATATTGACTATTCTTCGAGATGGGATTGTAATTGGTTTGAAAAAATTTGAGTTTCTGGCTTTCTCTGCGAGTCAACTCCGATCAAATTCAGTTTGGGTTTTTGCTTCGAGTGACAAGTTGAAAGCAGCAGATATTAGAGAATGGATGGGATGCTTCAACAATATTCGCAGCGTTTCTAAATGTGCAGCGAGGATGGGTCAGTTGTTCAGTTCATCAATGCAAACTTATGAAGTGCCCATTCAAGATGTGGAAATAATTCAAGATATTGAAGTTGAGACTGATGGTATAAAATACTGCTTCTCAGATGGTATTGGGAAAATTTCCCTCTCTTTTGCAAAAAAGGTTGCTGAAAAGCTAAAATTGGATAAGAATCAGATTCCATCAGCATTTCAAATTCGGTATGGTGGATACAAAGGTGTTCTTGCTGTTGATCGCCATTCCTTTAGGAAGTTATCGCTGCGTGGCAGTATGCTTAAATTTGAATCAAAAAACAAAATGCTTTGTGTCACTAATTGGAGTGATTCAATGCCTTGCTTTCTCAACCGAGAGGTTATATCTTTGCTGTCTACTTTAGGAGTAAAAGATGAGGCGTTTTTGGCAATGCAGCAGGAACAAGTGCATTTGCTAGGAAGGATGTTGACTGACAGTGATGCGGCTTTGGAAGTTTTGGAAACCCTAAGTGGAGCTGATTCTAAAAGCATTCTAGTGAAGATGTTGCATGGATTTTATAAGCCGAACAGTGAGCCTTACCTGGCGATGATGCTCAAAGCAAATTATGCATACCAGTTATCTGATTTGAGAACTAGATGCCGAATATTTGTTCCCAAGGGTCGTATCTTGTTAGGTTGCTTGGATGAAACTGGTCATTTGGATTATGGTCAAGTATTTGTCCGCATAACTGTGCCCAAAGCTAAGCAACAGTTTGAAGATGAAAGCTTGAGGAAAGTGGATGGTGATGACAGCACTTGTATACTAGTGGGGAAGGTGGTAGTAACAAAAAATCCTTGTCTTCACCCTGGAGACATCAGAGTCCTTGATGCTGTCTACAGTGAAGAACTAGAGGAAATGGGTTTGAGGGATTGCCTTGTATTTCCACAAAAAGGTCGTAGGCCTCATCCAAATGAATGCTCTGGGGGTGACCTTGATGGAGATTTATTTTTCTTAAGCTGGGAGAAAGATATGATCCCATCTCACACTGATTCTCCAATGGACTACACGGGGAGGAGGCCTCGTATAATGGACCACGATGTGACACTGGAGGTAATTTAA 2520 0.4349 METLTATPDTGTTVRVSNIPISATATDLVHFLQATLGPSSVFALEIFTDQNNATWNSRSFGRVQFETPDAKTKALSLSHHPRDDRMSVLHTWERVRGWPMPERRKIEFWVPHDGQCYKLEIWFEDILEANGYCLGGGDKLNALLLKLKYAPKIYQKKFGSNVSSKFNAANGRYHFCKEDYDFTWVRTTDFSAMKALGHSTSFCWEIEEGPFNQDIFRSFPLYREILKDLTLEEGEEYCSPAEIVPLVNCLSTDTKIPYETLFQLNSLIHTQKISLASVDSDFIDLLGSLDEETKALIFQKLHKLNSTCYEPQKFVNTQLHVLSSKGRGPHPSSQKRLMENNIMSCHRALITPTKIYCLGPELETSNHVVKHFSQFASDFMRITFVDENWGKLPVNAVSASLQKGIFSEPFRTKIYERILTILRDGIVIGLKKFEFLAFSASQLRSNSVWVFASSDKLKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTYEVPIQDVEIIQDIEVETDGIKYCFSDGIGKISLSFAKKVAEKLKLDKNQIPSAFQIRYGGYKGVLAVDRHSFRKLSLRGSMLKFESKNKMLCVTNWSDSMPCFLNREVISLLSTLGVKDEAFLAMQQEQVHLLGRMLTDSDAALEVLETLSGADSKSILVKMLHGFYKPNSEPYLAMMLKANYAYQLSDLRTRCRIFVPKGRILLGCLDETGHLDYGQVFVRITVPKAKQQFEDESLRKVDGDDSTCILVGKVVVTKNPCLHPGDIRVLDAVYSEELEEMGLRDCLVFPQKGRRPHPNECSGGDLDGDLFFLSWEKDMIPSHTDSPMDYTGRRPRIMDHDVTLEVI 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01923 839 PANTHER RNA-DEPENDENT RNA POLYMERASE 82 839 IPR007855 GO:0003968
Aip01g01923 839 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 10 80 - -
Aip01g01923 839 Gene3D - 3 96 IPR012677 -
Aip01g01923 839 PANTHER RNA-DEPENDENT RNA POLYMERASE 10 80 IPR007855 GO:0003968
Aip01g01923 839 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 82 839 - -
Aip01g01923 839 CDD RRM_SF 14 80 - -
Aip01g01923 839 Pfam RNA dependent RNA polymerase 350 837 IPR007855 GO:0003968
Aip01g01923 839 SUPERFAMILY RNA-binding domain, RBD 8 88 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01923 Aip-Chr1 102770126 102773221 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01923 K11699 - gmx:100808274 1245.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01923 01 102770126 102773221 Aip01g01923 01 102770126 102773221 ECH