Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01898 ATGCCAATAAATGTTGCAAATGAATATCAAGATGAAGGGAGAGTCCATGAAATGAATGGGATTGCAAAGCCATTACCTTCTAAGAAAGCCATAACTACAAACAAGTCACCAAGGAGTCCCTTGAGTCCACAAAAACTTCATCACCGGACTTTTTCCGGTACAAAGTTTCCAATTCATGGGGTTGGTGTTTCCTCTTCGGAACATGTCTGGGATGGTGCTGATAATTCACCTTCAATAAGAAGTTGTGGATCTTTTGGTGATGAGCCTAGAATTGATTCTTTGTTATCTTCAACGGATAGTCCAAGAAAGGCAGACAAAGGATTACCAAATTTCGGCCTTTCAGTACTAACAAAATCCTTATCCAAGGTAAGGACTACTCCAGCTTCAAAGCCTCCTGCTGGAATTAAGAATGAGAGCGTTTTGAAGACACAAACTAGCATGAACAGATCAAAACCTCCTTTAACCACATCAGGTTCCAAAAATGGTGCTGATTTTTCGCCTCGATCATCGATATTGGATAAGCCTGAAATGGGACATGTTTTTCTAAAACAGGCAAGGGACTTTATGTCAGTAGGGGATAACCCACAGAAAGCGCTTGAAGCGGCTCTTCAAGCGTTGAGAATATTCGAGAAGGTTGCTAATGGAAAGAGAAGTTTAGATTTGGTTATGTGTTTACATGTTACAGCAGCAATATATTGCAGTTTGGGCCAATATGATAAGGCAATTCCAATAATTGAATGCTCAATTGAGATTCCTGTTGTTGAGGAAGGATTACAAAATGCCCTTGCTAAATTCTCTGGTTACATGCAACTGGGAGATACGTATGCTATGCTAGGCCAAATTAAGAATGCAATTATCTATTACTCTGAAGGGCTTGAACTACAGAAGCAGGTTTTGGGGGAAACAGATCCAAGAGTTGGTGAGACTTGTAGGTATGTTGCTGAAGCCAATGTTCAAGCATTTCAATTAGATGAAGCAGAGAGGCTATGCCAAATGGCTCTTGACATTCATAGGGAAAATGGTTCCCCCCAATCTCTCGAAGAAGCAGCCGATAGGAGGTTAATGGGACTTATATGCGAAACAAAGGGAAATCATGAAGCTGCACTGGAGCATCTTGTTTTAGCCAGCTTGGCAATGGTGGCAAATGGCCAAGAAGTAGAGGTGGCATCTGTTGATTGTAGCATTGGAGATACATTTATATCATTGGCTCGATATGATGAAGCCATCGTGGCATTCCAGAAAGCGCTGAAGGTCTTCAAAGCCAGCAAAGGAGAGAATCATCCTGCGGTCGCATCAGTCTATGTGCGGTTAGCTGAATTGTATAACAGGACTTGGAAGCTAAAGGAATCAAGGTTTTATTGCCAAAGCGCGCTTAGGATCTATGAGAATCCAGAAGCTGGTGTCCCGCCAGAGGACATTGCCATTGGTCTAACTAATGTCTCGGTTATCTACGAGTCGATGGGTGAGCCTGAAAAGGCACTTAACTTGCTCCACAAGGCACTTGTGATACTGAAGGATGTGCCTGGACAACAACGAACTATTGCAGGAATTGAAGCTCAAATTGGAGTTATCAACTATATGTTGGGGAGATATCAAGAATGCTATGATGCTATGGAGAATGCTATCTCGAAGCTTCGTGCCAGCGGAGATAAGAAATCAGCATACTTTGGCGTCGCTCTTAATCAAATGGGACTTGCTTGTGTGCAGCTTCATGCCTTGGAAGAGGCTGTAGAATTGTTTGAAGAAGCAAAGATTGTTCTGGAACAAGAGTATGGACCATATAACTCTGAAACTCTTGGAGTGTATAGCAATCTTGCTGGAGCATATGATGGACTTGGCAGGGTGGATGATGCAATTGACATTCTGGATTACATAGTGGAGATGAGGGAATCAAAGCTTGGGACAGCAAATCCAGATGTTGTTGATGAGAAGAGAAGGTTGGATGAGTTGTTGAAGCAAACAGGGAGAGTTCGTACAAGAAAAGGAAGGTCACTTGATCAGCTTCTTGATGGAAATGTCCGTACTATGGGTGACCTTATTTTCCTCAATGCCTGA 2055 0.4248 MPINVANEYQDEGRVHEMNGIAKPLPSKKAITTNKSPRSPLSPQKLHHRTFSGTKFPIHGVGVSSSEHVWDGADNSPSIRSCGSFGDEPRIDSLLSSTDSPRKADKGLPNFGLSVLTKSLSKVRTTPASKPPAGIKNESVLKTQTSMNRSKPPLTTSGSKNGADFSPRSSILDKPEMGHVFLKQARDFMSVGDNPQKALEAALQALRIFEKVANGKRSLDLVMCLHVTAAIYCSLGQYDKAIPIIECSIEIPVVEEGLQNALAKFSGYMQLGDTYAMLGQIKNAIIYYSEGLELQKQVLGETDPRVGETCRYVAEANVQAFQLDEAERLCQMALDIHRENGSPQSLEEAADRRLMGLICETKGNHEAALEHLVLASLAMVANGQEVEVASVDCSIGDTFISLARYDEAIVAFQKALKVFKASKGENHPAVASVYVRLAELYNRTWKLKESRFYCQSALRIYENPEAGVPPEDIAIGLTNVSVIYESMGEPEKALNLLHKALVILKDVPGQQRTIAGIEAQIGVINYMLGRYQECYDAMENAISKLRASGDKKSAYFGVALNQMGLACVQLHALEEAVELFEEAKIVLEQEYGPYNSETLGVYSNLAGAYDGLGRVDDAIDILDYIVEMRESKLGTANPDVVDEKRRLDELLKQTGRVRTRKGRSLDQLLDGNVRTMGDLIFLNA 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01898 684 PANTHER KINESIN LIGHT CHAIN 31 672 - -
Aip01g01898 684 ProSiteProfiles TPR repeat profile. 389 422 IPR019734 GO:0005515
Aip01g01898 684 Pfam Tetratricopeptide repeat 559 630 - -
Aip01g01898 684 Pfam Tetratricopeptide repeat 388 463 - -
Aip01g01898 684 SUPERFAMILY TPR-like 265 463 IPR011990 GO:0005515
Aip01g01898 684 SUPERFAMILY TPR-like 180 296 IPR011990 GO:0005515
Aip01g01898 684 Gene3D Tetratricopeptide repeat domain 586 665 IPR011990 GO:0005515
Aip01g01898 684 MobiDBLite consensus disorder prediction 122 172 - -
Aip01g01898 684 ProSiteProfiles TPR repeat profile. 265 298 IPR019734 GO:0005515
Aip01g01898 684 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 31 672 - -
Aip01g01898 684 MobiDBLite consensus disorder prediction 29 46 - -
Aip01g01898 684 Pfam MalT-like TPR region 193 376 IPR041617 -
Aip01g01898 684 Gene3D Tetratricopeptide repeat domain 377 554 IPR011990 GO:0005515
Aip01g01898 684 MobiDBLite consensus disorder prediction 138 166 - -
Aip01g01898 684 Coils Coil 570 590 - -
Aip01g01898 684 MobiDBLite consensus disorder prediction 27 46 - -
Aip01g01898 684 Gene3D Tetratricopeptide repeat domain 172 264 IPR011990 GO:0005515
Aip01g01898 684 Gene3D Tetratricopeptide repeat domain 265 376 IPR011990 GO:0005515
Aip01g01898 684 SMART tpr_5 222 255 IPR019734 GO:0005515
Aip01g01898 684 SMART tpr_5 515 548 IPR019734 GO:0005515
Aip01g01898 684 SMART tpr_5 307 340 IPR019734 GO:0005515
Aip01g01898 684 SMART tpr_5 389 422 IPR019734 GO:0005515
Aip01g01898 684 SMART tpr_5 557 590 IPR019734 GO:0005515
Aip01g01898 684 SMART tpr_5 265 298 IPR019734 GO:0005515
Aip01g01898 684 SMART tpr_5 599 632 IPR019734 GO:0005515
Aip01g01898 684 SMART tpr_5 431 464 IPR019734 GO:0005515
Aip01g01898 684 SMART tpr_5 474 507 IPR019734 GO:0005515
Aip01g01898 684 SUPERFAMILY TPR-like 425 631 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01898 Aip-Chr1 100609740 100613021 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01898 - - vvi:100255253 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01898 01 100609740 100613021 Aip01g01898 01 100609740 100613021 ECH
Aip01g01898 01 100609740 100613021 Aip01g01898 01 100609740 100613021 PCT