Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01850 ATGAAGGCAACAGTAAGGTACTTAGCTGGAATAGCAGGGCCAAGTGGTTTTGGCTCTAACTCTACCGCTGAACAAGTCACTCTTCAACATCATTCTTCCTCTTGCAATCTAACCGCTCTCATCACTGGAGCAAGTTCTGGAATTGGAGCTGAAACGGCAAGGGTGTTAGCAAAGAGAGGAGTGAAAGTAGTTATTGCAGCGAGAGACTTAAAGAAAGCAAAAGATGTGATAGAGAATATTCGAAAAGAGACACCAAATGCTGAGGTTATTCTATTGGAGATTGATCTTAGCTCTTTTGCTTCTATTCAGAGATTTTGTTCCGAATTTTTAGCTTTGGAACTTCCCCTCAATATTCTCATAAATAATGCAGGAATATTCTCCCCAAATCTTGAGTTCTCTGAAGATAAATTTGAAATGACATTTGCTACAAATTACTTAGGACATTTTTTGTTAACGAAGATGCTATTAGAGAAATTGATAGATACAGCAAAGAAGACAGGCATTGAAGGAAGAATAATAAACGTTTCCTCTGTCATCCATAGCTGGGTGAACAGAGGCTGTTTTCGCTTCAATGACATACTCGCCGGAAAAAACTATAATGGCACACGCGCATATGCTCAGTCAAAATTGGCTAGCATTCTACATGTGAAGGAAATGGCTAGACAGCTCAAGGCACGGAATGCTAGAGTAACTATCAATGCAGTTCATCCAGGAATCGTGAAGACAGGGATTATTAGAGCTCATAAGGGCTTAATTACGGATTCCATATTTTTCATCGCATCCAAATTACTGAAATCAAAATCACAGGGTGCGGCAACCACATGTTATGTTGCTCTAAGTTCCCAAGCAGAAGGAGTGAGTGGGAAATATTTCACAGATTGCAATGAATGTAACTGCTCAAGTCTTGCAAGCAATGAATTCGAAGCACGAAAGCTATGGAACAACACACATGCCTTGCTTCACAAGCGACTCCGTCAAGCAGCAACTTGA 990 0.404 MKATVRYLAGIAGPSGFGSNSTAEQVTLQHHSSSCNLTALITGASSGIGAETARVLAKRGVKVVIAARDLKKAKDVIENIRKETPNAEVILLEIDLSSFASIQRFCSEFLALELPLNILINNAGIFSPNLEFSEDKFEMTFATNYLGHFLLTKMLLEKLIDTAKKTGIEGRIINVSSVIHSWVNRGCFRFNDILAGKNYNGTRAYAQSKLASILHVKEMARQLKARNARVTINAVHPGIVKTGIIRAHKGLITDSIFFIASKLLKSKSQGAATTCYVALSSQAEGVSGKYFTDCNECNCSSLASNEFEARKLWNNTHALLHKRLRQAAT 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01850 329 Coils Coil 63 83 - -
Aip01g01850 329 PANTHER RETINOL DEHYDROGENASE 4 325 - -
Aip01g01850 329 CDD retinol-DH_like_SDR_c_like 38 313 - -
Aip01g01850 329 PRINTS Glucose/ribitol dehydrogenase family signature 38 55 IPR002347 -
Aip01g01850 329 PRINTS Glucose/ribitol dehydrogenase family signature 114 125 IPR002347 -
Aip01g01850 329 PRINTS Glucose/ribitol dehydrogenase family signature 164 180 IPR002347 -
Aip01g01850 329 PRINTS Glucose/ribitol dehydrogenase family signature 205 224 IPR002347 -
Aip01g01850 329 PRINTS Glucose/ribitol dehydrogenase family signature 228 245 IPR002347 -
Aip01g01850 329 Gene3D - 24 325 - -
Aip01g01850 329 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 114 125 IPR002347 -
Aip01g01850 329 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 178 IPR002347 -
Aip01g01850 329 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 205 224 IPR002347 -
Aip01g01850 329 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 325 - -
Aip01g01850 329 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 297 IPR036291 -
Aip01g01850 329 Pfam short chain dehydrogenase 38 179 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01850 Aip-Chr1 93091768 93094977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01850 19 247 Acyl Lipid Metabolism Gene Families AT1G63380 32.489 1.92e-19 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01850 - - gmx:100776567 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01850 01 93091768 93094977 Aip01g01850 01 93091768 93094977 ECH
Aip01g01850 01 93091768 93094977 Aip01g01850 01 93091768 93094977 PCT