Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01717 ATGGCAATGAATACAATGGTGGCAGAGGGTCCAAGAAGCCCAGAAGCGAAGCTTGGGTTGAGAGTGGAGGATCTTTGGGATGTTATGGAGCCACAGCTAAGTCCTACTGAGAAGCTTAATGCCTGCTTTGAAAGCATCCCAGTCTCTGCGTTTCCAATGGCTCCTTCAAACAAAGAACTTGAGATAAAATCAGATGCCACACTAGCCGAAGCTGTAAAAGTACTGGCACGTCACAACATTCTGAGTGCACCTGTGGTGAATGTTCACGCACCTGAAGATGCAAGTTGGCTTGATAGATACATCGGAATAATTGAGTTTGCTGGAATTGCTGTATGGATTCTGCATCAGTCTGAACCTACAACTCCTACAAGTCCATCCACTCCAAACACTCCAACCAGTGCAAGTGCTATTGCAGCTAAAGCAAACGGATTAACCTTTGCTCTAGAACTTGAAAATTTAGGCCTTGGATCTGCTGCAACCACTTCAGGGAACTTCTTTGAGGATCTCATTTCTTCTGAACCTTACAAGAACACCAAGGTCTGCGATATTTCAGGGACGTTCCGGTGGGCTCCATTTCTTGCTTTGGAGAGATCAAACTCGTTTCTAACCATGCTGTTGCTGCTTTCTAAGTACAAGATGAAGAGTGTCCCTGTGGTGGATTTAGGTGCTGATAGAATTGACAACATTATTACACAATCTGCAGTGATTCATATGCTAGCGGAATGTGCCGGGCTTCAGTGGTTTGAAAGCTGGGGAACCAAGAGTCTATCTGAAGTCGGTCTTCCCTTGGTGACACCAGACCAAATCATCAAGGTTTATGAGGATGAACCAGTGCTTCAAGCATTTAAATTGATGAGGAAGAAGAGGATTGGAGGGGTGCCTGTGATGGATAGGGATCAAGGCAAGGCAGTTGGTAACATAAGCTTGCGAGATGTTCAGTTCTTGCTAACTGCCCCAGAAATCTACCATGATTATAGATCTATTACAGTAAAGGACTTTGTGACAGCAGTTAGAAGCTACCTAGAGAAGAATAAAGATGCAAACCCAATGTCAAGTGAATTAGTTACATGTAAAATTCATTGCACGATCAAGGATCTGATTAAATTGCTTGATGATGAGAAGATTCATCGAGTCTATGTCGTCGATGATGATGGGAATCTACAAGGACTTATCACGCTGAGGGATATCATCTCAAGGCTAGTACACGAGCCACGTGGCTATTTTGGTGATTTCTTTGATGGTGTTCTTCCCCTGCCTCTGGATTGCCGGGTTTGA 1275 0.4416 MAMNTMVAEGPRSPEAKLGLRVEDLWDVMEPQLSPTEKLNACFESIPVSAFPMAPSNKELEIKSDATLAEAVKVLARHNILSAPVVNVHAPEDASWLDRYIGIIEFAGIAVWILHQSEPTTPTSPSTPNTPTSASAIAAKANGLTFALELENLGLGSAATTSGNFFEDLISSEPYKNTKVCDISGTFRWAPFLALERSNSFLTMLLLLSKYKMKSVPVVDLGADRIDNIITQSAVIHMLAECAGLQWFESWGTKSLSEVGLPLVTPDQIIKVYEDEPVLQAFKLMRKKRIGGVPVMDRDQGKAVGNISLRDVQFLLTAPEIYHDYRSITVKDFVTAVRSYLEKNKDANPMSSELVTCKIHCTIKDLIKLLDDEKIHRVYVVDDDGNLQGLITLRDIISRLVHEPRGYFGDFFDGVLPLPLDCRV 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01717 424 ProSiteProfiles CBS domain profile. 350 408 IPR000644 -
Aip01g01717 424 Gene3D - 253 403 IPR046342 -
Aip01g01717 424 SUPERFAMILY CBS-domain pair 228 410 IPR046342 -
Aip01g01717 424 Gene3D - 42 244 IPR046342 -
Aip01g01717 424 ProSiteProfiles CBS domain profile. 53 120 IPR000644 -
Aip01g01717 424 Pfam CBS domain 350 401 IPR000644 -
Aip01g01717 424 Pfam CBS domain 268 312 IPR000644 -
Aip01g01717 424 ProSiteProfiles CBS domain profile. 264 325 IPR000644 -
Aip01g01717 424 SUPERFAMILY CBS-domain pair 31 240 IPR046342 -
Aip01g01717 424 CDD CBS_pair_SF 267 397 - -
Aip01g01717 424 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 8 424 - -
Aip01g01717 424 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1-RELATED 8 424 - -
Aip01g01717 424 SMART cbs_1 353 401 IPR000644 -
Aip01g01717 424 SMART cbs_1 58 114 IPR000644 -
Aip01g01717 424 SMART cbs_1 268 317 IPR000644 -
Aip01g01717 424 SMART cbs_1 191 240 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01717 Aip-Chr1 70640674 70643987 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01717 - - gmx:100812388 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01717 01 70640674 70643987 Aip01g01717 01 70640674 70643987 ECH
Aip01g01717 01 70640674 70643987 Aip01g01717 01 70640674 70643987 PCT