Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01713 ATGAACAGTAACAATCCAGGTAGGAACGTTGCGGCACCGTCGTTTTTAGGGAATTCCGGAGCTGCCCCTCACCCCATCGCCGGTACCGCCGCCACCACCACCGCTGCTTCCACTTCGTTACCCGCGACCCACCCACAACCCCATCTTTTGTCCCAATCACAGCCTCCTCAAACCCAAGGTGGTTCTCACTTCCCCGGGCACTTTCAGCTCTCACAACCCCAAACCCAGTTACTTGCACAATCACAGTTTTCACAACCCCATTCCCATGTTCAATCCATCCCTCAACACCAGCAGCAGCCACCGCCGCGCCAGCCGCAGGCTCATCCTGCTAGCCAATCTCATGGTTCAAGTGGTAGTAGTGCGGCGGCAGCGGCAACTCCTGCTTCAACTGCCAAGCGCTCCGGGCAGAGGCCGCCTACTAGGCCGGCCGGTTCTTCAAATACTAACCAGTCTTCGGCTTTTAAGACCATGGAATTGACGCCGGCTCCTCTAAGGAGGAAGAGGAGCTTGCCAGAGAAGGATAAGAGGATTCCAGATAAGGTGGCCGCAGTTCTGCCTGAGTCTGCTGTTTATACTCAATTGCTTGAGCTTGAGGGACAGGTTGATGCTGCTTTGTCTAGGAAGAAGATTGATATACAGGAGGCTGTGAGAAGCCCCAGATGTGTTCAGAAGACTCTTCGTGTTTATGTGTATAATACCTTTTCGAATCAGAATAGAATCGATACTGAGAAGAAAATGGCAGAGGAGCCTTCTTGGTCACTTAGGATTACTGGGAGGATATTGGAAGATGGAAGAGATCCTGTGTTGGCTGGAGTCTCGCAGGGGTTGAACCCTTCATATCCCAAGTTTTCGGCTTTCTTCAAGAAAATTACCATATACTTGGACCAGGGGTTCTATCCGGATAATCATCTTATAATATGGGATCCTGCTCGTTCACCTGCCCAGCAGGACGGTTTTGAGGTGAAGAGGAAAGGAGACAAGGAATTCACGGTGGTGATGAGACTAGCAATGAATTATATACCTGAAAAGTTTGTGGTTTCAACAGCACTGTCCAAAGTTTTAGGGATTGAGTTTGATACTCGGCCTAGAATAATAGCTGCTCTATGGCAATATGTGAAGTCTAGAAAACTACAAAGCCCAAATGACCCTTCATTCTTCATGTGTGATCCTTCTCTCCAAAGGGTGTTTGGGGAAGAGAAAATAAAATTCTCCACAATTTTACAGAAGATATCACAGCAGTTATCACAACCACAGCCTATACACGTGGAGCATAAAATCAAGCTTTCTGGAAATTGTCCGGTTGGAACTACATGTTATGATGTGCTGGTTGATGTGCCTCTTCCACTGGAGAAGGATATGTCTGCATACTTGGCAAGCATTGAGAGGCACAAAGAGATTGATGCGCTTGATGAAGTGATTTGTAGTTCTATGAAGAAGATCCATGAGCATCGCAGAAGACGGGCCTTCTTTCTGGGATTTAGCCAGTCTCCAGCAGAGTTTATTAATGCTTTGATTGCATCACAGAGCAAGGATCTAAAGCTTATTGCTGGAGATGCCTGCCAAGATGAGGAAAAGGAAAGACGATCTGAATTCTACAAACAACCATGGGCTGAGGATGCTGTCATTCGCTACCTGAACCGGAAAAGTGCTCGAAGTGATATTCCTGGAAGCACCTAA 1677 0.4764 MNSNNPGRNVAAPSFLGNSGAAPHPIAGTAATTTAASTSLPATHPQPHLLSQSQPPQTQGGSHFPGHFQLSQPQTQLLAQSQFSQPHSHVQSIPQHQQQPPPRQPQAHPASQSHGSSGSSAAAAATPASTAKRSGQRPPTRPAGSSNTNQSSAFKTMELTPAPLRRKRSLPEKDKRIPDKVAAVLPESAVYTQLLELEGQVDAALSRKKIDIQEAVRSPRCVQKTLRVYVYNTFSNQNRIDTEKKMAEEPSWSLRITGRILEDGRDPVLAGVSQGLNPSYPKFSAFFKKITIYLDQGFYPDNHLIIWDPARSPAQQDGFEVKRKGDKEFTVVMRLAMNYIPEKFVVSTALSKVLGIEFDTRPRIIAALWQYVKSRKLQSPNDPSFFMCDPSLQRVFGEEKIKFSTILQKISQQLSQPQPIHVEHKIKLSGNCPVGTTCYDVLVDVPLPLEKDMSAYLASIERHKEIDALDEVICSSMKKIHEHRRRRAFFLGFSQSPAEFINALIASQSKDLKLIAGDACQDEEKERRSEFYKQPWAEDAVIRYLNRKSARSDIPGST 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01713 558 CDD SWIB_like 346 414 - -
Aip01g01713 558 MobiDBLite consensus disorder prediction 108 157 - -
Aip01g01713 558 MobiDBLite consensus disorder prediction 161 175 - -
Aip01g01713 558 Pfam SWIB/MDM2 domain 343 412 IPR003121 -
Aip01g01713 558 SMART swib_2 340 419 IPR019835 -
Aip01g01713 558 MobiDBLite consensus disorder prediction 1 175 - -
Aip01g01713 558 Gene3D SWIB/MDM2 domain 336 422 IPR036885 -
Aip01g01713 558 ProSiteProfiles SWIB/MDM2 domain profile. 339 416 IPR003121 -
Aip01g01713 558 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 114 555 - -
Aip01g01713 558 MobiDBLite consensus disorder prediction 30 97 - -
Aip01g01713 558 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 114 555 - -
Aip01g01713 558 SUPERFAMILY SWIB/MDM2 domain 334 424 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01713 Aip-Chr1 70182817 70186463 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Aip01g01713 SWIB 9.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01713 K11650 - zju:107418039 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01713 01 70182817 70186463 Aip01g01713 01 70182817 70186463 ECH