Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01704 ATGAAGTACACACAATTTGAGCGAGTTCTTGGTTACTTCGATGAAGATGGCGACGGTAAGATTTCAGCTTCTGAGCTAAGGAGCCAGCTCGGGAAGATGAGTGGCGAGATTCTATTGGAGGAGGAGGTGGAGATGGCCATCGCGGCGTTGGATTCGGATGGCGATGGGTTGCTGAGTTTTGAGGATATGATGAATCTCATGGAAGGAGGGGAGGAAGACGAGAAGTTGAAGGATTTGAAGGAAGCTTTCGAGATGTATGACACGGATCGATGTGGGTTCATTACTCCTAAAGGGTTGAGGAGAATGCTGAAAAAGTTGGGAGAATCTATGTCCGTTGAGGAATGCCAAGTTATGATTAGTCGCTTTGATTTGAATGGTGATGGGATGCTTAGCTTTGAAGAATTCAGAATTATGATGCAGTGA 423 0.4563 MKYTQFERVLGYFDEDGDGKISASELRSQLGKMSGEILLEEEVEMAIAALDSDGDGLLSFEDMMNLMEGGEEDEKLKDLKEAFEMYDTDRCGFITPKGLRRMLKKLGESMSVEECQVMISRFDLNGDGMLSFEEFRIMMQ 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01704 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Aip01g01704 140 Pfam EF-hand domain pair 12 67 IPR002048 GO:0005509
Aip01g01704 140 Pfam EF-hand domain pair 77 140 IPR002048 GO:0005509
Aip01g01704 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Aip01g01704 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Aip01g01704 140 Gene3D - 72 140 - -
Aip01g01704 140 SUPERFAMILY EF-hand 5 140 IPR011992 -
Aip01g01704 140 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Aip01g01704 140 SMART efh_1 5 33 IPR002048 GO:0005509
Aip01g01704 140 SMART efh_1 42 70 IPR002048 GO:0005509
Aip01g01704 140 SMART efh_1 78 106 IPR002048 GO:0005509
Aip01g01704 140 SMART efh_1 114 140 IPR002048 GO:0005509
Aip01g01704 140 Gene3D - 1 71 - -
Aip01g01704 140 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Aip01g01704 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Aip01g01704 140 CDD EFh 78 140 IPR002048 GO:0005509
Aip01g01704 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Aip01g01704 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 4 140 - -
Aip01g01704 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 4 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01704 Aip-Chr1 69103229 69104399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01704 2 140 EF-hand Containing Proteins AT1G76650 46.043 4.81e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01704 K13448 - gmx:100816563 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01704 01 69103229 69104399 Aip01g01704 01 69103229 69104399 ECH