Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01620 ATGAACGACCACCATTTTATTACTTCTCTCAAAACCCTAACCCCACATATCACGTGCATGGCGGTGCACCGTAACCTACTCTATGCCGCATCCCTAAACCTCATCAACGTCTTCGACTTCTCTCACTACTACAGCCACGTCGACGCCTTCAACGACACCAACCCGTCCTCCGGTTTCGTCAAATCCATAACCTTCACCGCCACAAAAGTCTTCACCGCACACCAAGACCGAAAGATTCGAATCTGGTTCATCACCTCCTCAAAGCGACACCGTTTCCTGTCTTCCCTTCCAACCGTTAAAGACTGCATTCGCCGCTGCATCGTTCCGAGGAACTACGTCAGCGTCCGACGCCACCGTAGGAGCCTCTGGATCCAGCATTGCGACACCGTTTCGGGCTTGGCACTGAACAAAGGTCTCATGTATTCGGTTTCTTGGGACAAGAGCCTCAAGGTTTGGGACTTAAACGGTTACCGGTGTTTGGAGTCCGTTAAGGCGGCGCATGAGGACGCTATTAACGCCGTCGTGGTTGCAACTGACGGAACCGTTTACACGGCTTCGGCGGATGGGTGCATTAAGGTTTGGGAGAGGGATGATAAGGTGAAACGCCACGTGCTCGTGAGCACCGTGGGGAAGAAGAGATCGGGGGTTAATGCGCTTGCATTATCGGACGGTGGGGATTTGTTTTCTGGGGGATGCGATGGCGGGATCTGTAGGTGGGAGAGGAAGTGTAGTGTAAACAAAGGAAACGACGTCGTTTTGGTGGAGAGGTTGAGGGGTCACGGTGGGGCCATTTTGTGTATGATCAGCGTATGTGGTTTGTTGGTGAGTGGGTCATTGGATCGGACGGTCAGGATTTGGCAGAGGGAAAAGGAGAATAGTGGGTTCTGTTGCAGGCTTGTTTTGGAAGGGCATGAGAAACCGGTGAAGTCGTTGGTTGCGTTTTCAAAGGGTGAAGAAGGTGATGATGAGTCAAACGGTGTCGTTACGATCTTAAGTGGAAGCCTTGATGGGGATATTAGGGTGTGGAAGGTGTTTGGTTTGGCTTGA 1047 0.5177 MNDHHFITSLKTLTPHITCMAVHRNLLYAASLNLINVFDFSHYYSHVDAFNDTNPSSGFVKSITFTATKVFTAHQDRKIRIWFITSSKRHRFLSSLPTVKDCIRRCIVPRNYVSVRRHRRSLWIQHCDTVSGLALNKGLMYSVSWDKSLKVWDLNGYRCLESVKAAHEDAINAVVVATDGTVYTASADGCIKVWERDDKVKRHVLVSTVGKKRSGVNALALSDGGDLFSGGCDGGICRWERKCSVNKGNDVVLVERLRGHGGAILCMISVCGLLVSGSLDRTVRIWQREKENSGFCCRLVLEGHEKPVKSLVAFSKGEEGDDESNGVVTILSGSLDGDIRVWKVFGLA 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01620 348 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 5 344 IPR045182 -
Aip01g01620 348 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 5 344 - -
Aip01g01620 348 ProSitePatterns Trp-Asp (WD) repeats signature. 140 154 IPR019775 -
Aip01g01620 348 Pfam WD domain, G-beta repeat 159 194 IPR001680 GO:0005515
Aip01g01620 348 Pfam WD domain, G-beta repeat 297 343 IPR001680 GO:0005515
Aip01g01620 348 Pfam WD domain, G-beta repeat 256 286 IPR001680 GO:0005515
Aip01g01620 348 SUPERFAMILY WD40 repeat-like 5 345 IPR036322 GO:0005515
Aip01g01620 348 Gene3D - 245 346 IPR015943 GO:0005515
Aip01g01620 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 164 195 IPR001680 GO:0005515
Aip01g01620 348 Gene3D - 3 244 IPR015943 GO:0005515
Aip01g01620 348 PRINTS G protein beta WD-40 repeat signature 140 154 IPR020472 -
Aip01g01620 348 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Aip01g01620 348 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Aip01g01620 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 287 IPR001680 GO:0005515
Aip01g01620 348 SMART WD40_4 46 83 IPR001680 GO:0005515
Aip01g01620 348 SMART WD40_4 202 240 IPR001680 GO:0005515
Aip01g01620 348 SMART WD40_4 3 39 IPR001680 GO:0005515
Aip01g01620 348 SMART WD40_4 250 287 IPR001680 GO:0005515
Aip01g01620 348 SMART WD40_4 294 343 IPR001680 GO:0005515
Aip01g01620 348 SMART WD40_4 156 195 IPR001680 GO:0005515
Aip01g01620 348 SMART WD40_4 117 153 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01620 Aip-Chr1 60457461 60458549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01620 70 343 Acyl Lipid Metabolism Gene Families AT3G18860 23.551 4.02e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01620 - - aprc:113874855 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01620 01 60457461 60458549 Aip01g01620 01 60457461 60458549 ECH