Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01612 ATGGCAAAGAATGTGGGAATCTTTGCCGTTGACATTTACTTTCCTCCTACCTGTGTTCAACAGGAAGCACTGGAGGAACATGATGGTGCAAGCAAAGGGAAATATACTATTGGACTTGGGCAAGATTGCATGATTTTTTGTACTGAAGTAGAAGATGTCATTTCAATGAGTTTGACGGTAGTTTCTTCTCTTCTTGAGAAGTATCAAATCGATCCTAAAAGCATTGGTCGTTTGGAAGTTGGTAGTGAAACTGTGATAGACAAAAGCAAATCCATCAAGACATTCCTCATGCAGATCTTTGAGAAACATGGAAACACTGATATTGAGGGTGTTGATTCAACTAATGCTTGCTATGGAGGAACTGCTGCTTTGTTCAATTGTGTCAACTGGGTGGAGAGCAGCTCATGGGATGGACGCTATGGATTGGTCGTTTGCACCGACAGTGCTGTCTATGCTAAAGGACCTGCTCGGCCTACTGGTGGAGCTGCTGCTATTGCCATGCTAATCGGTCCTGATGTTCCCATTGCTTTCGAAAGCAAATTGAGGGCAAGTCATATGTCACATGTGTATGATTTTTACAAGCCTAACCTTGCGAGTGAATATCCGGTAGTTGATGGGAAACTTTCTCAAACATGTTATCTTATGGCTCTTAATTCTTGCTATAATCAGCTCAGCAAAAAACATGAGAAACTTCAGGGAAAACAATTTTCTATTTCTAATGCTGATTATTTTGTATTTCACTCTCCCTATAACAAGCTTGTACAGAAAAGTTTTGCTCGTTTGGTATTCAACGACATCTTGAAGAATCCCAGCTTGATGGGTGAAACTGCTAAAGAAAAGCTGGCACCATTTGTAACACTATCTAGTGAAGAAAGCTATCAAAGTCGGGATCTAGAGAAGGTATCCCAGCAGGTTGTGAAACCTCTGTATGATGAAAAGGTGCAACCAGGCACTTTGATACCGAAACAAATTGGCAACACATACACTGCATCGCTCTATGCAGCCTTTATTTCGCTTCTTCACAACAAAAATAGCACACTGGCCAGTAAGAGGGTGATATTATTCTCATATGGAAGTGGCTTGACTTCTACAATGTTCTCTTTACAAATAAATGAAGGTCAACATCCATTTAGCTTGTCAAACATTGCTAAAGTGTTGGACATTGCTGCAAAGCTGAAGTCAAGGCACGAGTTCCCTCCAGCTAAATTTGTCGAAACTTTGAAGTTAATGGAGCATAGGTATGGTGGCAAAGAGTTTGTAACAAGTAAGGACACTAGCCTTCTATCTCCTGGAACATACTATCTCACTGAAGTAGACTCCATGTATCGGAGATTCTATGAACAGAAATTTAGTAAAACTGCAGAATATGGTGCGGTTGCCAATGGTCACTGA 1392 0.408 MAKNVGIFAVDIYFPPTCVQQEALEEHDGASKGKYTIGLGQDCMIFCTEVEDVISMSLTVVSSLLEKYQIDPKSIGRLEVGSETVIDKSKSIKTFLMQIFEKHGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAKGPARPTGGAAAIAMLIGPDVPIAFESKLRASHMSHVYDFYKPNLASEYPVVDGKLSQTCYLMALNSCYNQLSKKHEKLQGKQFSISNADYFVFHSPYNKLVQKSFARLVFNDILKNPSLMGETAKEKLAPFVTLSSEESYQSRDLEKVSQQVVKPLYDEKVQPGTLIPKQIGNTYTASLYAAFISLLHNKNSTLASKRVILFSYGSGLTSTMFSLQINEGQHPFSLSNIAKVLDIAAKLKSRHEFPPAKFVETLKLMEHRYGGKEFVTSKDTSLLSPGTYYLTEVDSMYRRFYEQKFSKTAEYGAVANGH 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01612 463 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 2 449 IPR010122 GO:0004421|GO:0008299
Aip01g01612 463 SUPERFAMILY Thiolase-like 175 447 IPR016039 GO:0016746
Aip01g01612 463 CDD init_cond_enzymes 4 368 - -
Aip01g01612 463 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Aip01g01612 463 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 449 - -
Aip01g01612 463 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
Aip01g01612 463 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Aip01g01612 463 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
Aip01g01612 463 Gene3D - 1 450 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01612 Aip-Chr1 60128658 60136065 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01612 K01641 - gmx:100780554 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01612 01 60128658 60136065 Aip01g01612 01 60128658 60136065 ECH