Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01438 ATGGGAACTCGATCGAATTTCTACAAGAACCCATCCATCTCTTACAACAAACACTTCAGTCTCTCTTCCGTTCTTCAGAACCTACAAGCTTACAATACCGCCACCGGCAACGCTCCTCCATCCGATGAACTGCCATCTATTTCCGCCACTTCCTCCGTCGAAAATACTCGCTCCCTCAAACGCCACCGCGATCCCAAGCCTCCGAAATCCCAGCCCGATTGCGATGTACCTAGCTCCATGTCACACCGCGATTACGTCCAAAAAAGAAGGGACGAAGTTGATTCGTCTCGAAATTGCGATCGTGTAGAATTGACTGAAGATGTGTTGTTGCACTGCCGGGGAAACCCTAACTCTGCTGTAGCCTTGGTGGATTATGCTAGTGATGAAGGTAGCCCTTCAGACCGTCAAGAAGCACACACTCCTCCCGATACTACTGACCAAGAAAAAGAATTTCATGGAATTAAAAGCAGAAGTGAGCAGCGCTTTCCTGTCAGTGGAGAACCTATTTGTCTCATATGTGGCAGATACGGAGAATACATATGCAATGAGACAAATGATGATGTCTGTAGCATGGAGTGCAAAAAGGAGCTTTTGGAAACTCTGAAATTGAATGAGGGATCCTCCCATATCCAAGTCAGACATTTCTCCTCATCTGGAATTAGTAATGTATCGCTGGAGCCTGTATTTAGTGATGATAACTGGGATTATGATCGGCATCGCTGGACAAAAAAGAGATCTAGCCTTTCAACATATGAATGTTGGAAATGTCATAGACCTGGGCACCTAGCTGAAGACTGTCTAGTAAAGAGTTGTAGCCAGATCACACCATCAAGTAATAGATCTAGTTCCATTCCCAAGGATCTTCTTGGACTGTATAGAAGATGCCATCAAATTGGCAGAGACTTGTTGGCTGCAAACTGTAATGTGTGCCGTAACTCATCAAATTTGGCTACTTGCCTTGATTGTAGTGTAGTCCTTTGTGACCGGGCAGGACACTTGGATGAACATATAAAGACACACCCATCTCATCAAAAGTGTTACTCACACAAGCTAAAACGTCTGGTAAAATGCTGCAAGTCAACATGCAATGTCACTGACATCAAGGATCTTTTGATTTGCCACTACTGCTTTGATAAAGCCTTTGAAAAGTTCTATGACATGTATACCGCAATGTGGAAGGAGGCTGGGCTTTCAATCATATGGGGTTCTATATGCTGTGAAGATCACTTCACCTGGCATAGGATGAATTGTTTGAATGCAGATGTGGAAGTTAATGCATATATTTTTAAAAATGACGGTCTAAGAGGTAAACCTAGGCAACTTAGTGACTTCATTTTTTGA 1341 0.4348 MGTRSNFYKNPSISYNKHFSLSSVLQNLQAYNTATGNAPPSDELPSISATSSVENTRSLKRHRDPKPPKSQPDCDVPSSMSHRDYVQKRRDEVDSSRNCDRVELTEDVLLHCRGNPNSAVALVDYASDEGSPSDRQEAHTPPDTTDQEKEFHGIKSRSEQRFPVSGEPICLICGRYGEYICNETNDDVCSMECKKELLETLKLNEGSSHIQVRHFSSSGISNVSLEPVFSDDNWDYDRHRWTKKRSSLSTYECWKCHRPGHLAEDCLVKSCSQITPSSNRSSSIPKDLLGLYRRCHQIGRDLLAANCNVCRNSSNLATCLDCSVVLCDRAGHLDEHIKTHPSHQKCYSHKLKRLVKCCKSTCNVTDIKDLLICHYCFDKAFEKFYDMYTAMWKEAGLSIIWGSICCEDHFTWHRMNCLNADVEVNAYIFKNDGLRGKPRQLSDFIF 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01438 446 MobiDBLite consensus disorder prediction 130 157 - -
Aip01g01438 446 MobiDBLite consensus disorder prediction 82 97 - -
Aip01g01438 446 MobiDBLite consensus disorder prediction 33 97 - -
Aip01g01438 446 MobiDBLite consensus disorder prediction 127 160 - -
Aip01g01438 446 MobiDBLite consensus disorder prediction 33 55 - -
Aip01g01438 446 ProSiteProfiles Zinc finger CCHC-type profile. 253 266 IPR001878 GO:0003676|GO:0008270
Aip01g01438 446 Gene3D - 246 293 - -
Aip01g01438 446 MobiDBLite consensus disorder prediction 56 70 - -
Aip01g01438 446 SUPERFAMILY Retrovirus zinc finger-like domains 237 266 IPR036875 GO:0003676|GO:0008270
Aip01g01438 446 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 446 - -
Aip01g01438 446 Pfam HIT zinc finger 168 195 IPR007529 -
Aip01g01438 446 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN ISOFORM 4 1 446 - -
Aip01g01438 446 Gene3D - 152 208 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01438 - - gmx:100814892 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01438 01 45623333 45630629 Aip01g01438 01 45623333 45630629 ECH