Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01309 ATGGGCTGCTTCAACTCTAAGCCAACAAGACAGTCTCCGGGGCAGGTCGATCCAGTAGTTCTTGCATCACAGACAGCTTTCACGGTCAGTGAGGTTGAAGCACTTTTTGAGCTATTTAAGAGCATAAGCAGTTCGGTCGTTGATGATGGACTAATAAGCAAGGAAGAATTTCAATTGGCAATCTTCAAGAATAGGAAGAAGGAGAATATCTTTGCCAATCGGATCTTTGATCTATTTGATGTTAAGAGGAAGGGAGTAATTGACTTTGATGACTTTGTTCGATCTCTCAATGTCTTCCACCCAAATGCACCACTGGAAGACAAGATTGATTTTTCATTTAGGCTCTATGATTTGGACAGCACAGGCTTTATAGAACGCCAAGAGGTCAAGCAAATGTTGATTGCGCTTCTCTGTGAATCTGAAATGAAGCTAGCAGATGAGGTGATCGAAACAATTATTGACAAGACATTCATGGATGCTGACCTGAACAAAGATGAGAAGATAGACATTGTTGAGTGGCAAAATTTCGTTTCTAAAAATCCATCATTGCTCAAAATCATGACGCTACCCTATCTGAGGGATATAACCACTTCTTTCCCAAGTTTTGTATTTAACTCTAACGTGGATGAAATCGCTGCTTGA 642 0.405 MGCFNSKPTRQSPGQVDPVVLASQTAFTVSEVEALFELFKSISSSVVDDGLISKEEFQLAIFKNRKKENIFANRIFDLFDVKRKGVIDFDDFVRSLNVFHPNAPLEDKIDFSFRLYDLDSTGFIERQEVKQMLIALLCESEMKLADEVIETIIDKTFMDADLNKDEKIDIVEWQNFVSKNPSLLKIMTLPYLRDITTSFPSFVFNSNVDEIAA 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01309 213 Pfam EF hand 153 177 IPR002048 GO:0005509
Aip01g01309 213 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Aip01g01309 213 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Aip01g01309 213 SUPERFAMILY EF-hand 21 202 IPR011992 -
Aip01g01309 213 Gene3D - 17 211 - -
Aip01g01309 213 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
Aip01g01309 213 PANTHER BNAC07G34450D PROTEIN 1 212 - -
Aip01g01309 213 CDD EFh 108 178 IPR002048 GO:0005509
Aip01g01309 213 SMART efh_1 71 99 IPR002048 GO:0005509
Aip01g01309 213 SMART efh_1 108 136 IPR002048 GO:0005509
Aip01g01309 213 SMART efh_1 152 180 IPR002048 GO:0005509
Aip01g01309 213 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Aip01g01309 213 PRINTS Recoverin family signature 75 96 - -
Aip01g01309 213 PRINTS Recoverin family signature 122 140 - -
Aip01g01309 213 PRINTS Recoverin family signature 168 188 - -
Aip01g01309 213 PANTHER CALCINEURIN B 1 212 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01309 Aip-Chr1 37878839 37882107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01309 1 213 EF-hand Containing Proteins AT4G17615 81.690 2.81e-128 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01309 K06268 - cit:102622664 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01309 01 37878839 37882107 Aip01g01309 01 37878839 37882107 ECH
Aip05g00445 05 5010480 5012283 Aip01g01309 01 37878839 37882107 PCT