Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01286 ATGGCCTTAACACTTCGTTCTTCAATCTCTTTTGTAAACCAGAAAGAAACCAAGGCCCTTAAAGCTTTTGATGATGTCTCTGCCACAGTTAGCTTTGCAAAGATTAAGCCATCTTCCCGCATTCAAGTAAAGAATTCGGCGAGGGAAGCAAGTCATCATCAGACACACCAGAGAGATGAGCAACGGGAGAAGGTGCATGCGCCGTCAGTTGCTCATCACGACAACCACAATGTGTCAAAGAGGGTGCCTGTGTATGTGATGCTGCCGCTAGACACAGTAACAATGGGAGGCGGCTTGAACAAGCCGAGAGCAATGAATGCAAGTTTGATGGCTCTGAAAAGTGCCGGCGTTGAAGGGGTAATGGTTGATGTATGGTGGGGTTTGGCGGAGAAAGATGGACCTCTGAAGTACAACTGGGAAGCCTACGCTGAGCTTGTGCAGATGGTACAAATGCATGGCTTGAAGCTTCAAGTTGTCATGTCTTTCCATCAGTGTGGAGGAAATGTTGGAGACACTTGCAGCATTCCTCTACCACCATGGGTGTTGGAAGAGATCAGCAAGAACCCTGACCTGGTTTATACAGACAGATCAGGGAGGAGGAATCCTGAGTACATCTCTTTAGGGTGTGATTCCATGCCTGTGCTGAAAGGAAGGACTCCCCTCCAAGTTTACTCTGACTACATGAAGAGCTTCCATGACAGATTCAGAAATTACTTGGGCAGTGTTATCGTGGAAATACAAGTAGGTATGGGTCCTTGTGGGGAGCTAAGATATCCATCATACCCAGAAAGCAATGGAACTTGGAGGTTTCCTGGAATTGGTGAATTCCAATGCTACGACAAGTATATGAAAGCATCCTTGGCAGCAGCTGCAGAAGCCATTGGAAAGAAAGAATGGGGAACAAGTGGTCCCCATGACTCTGGCAAGTACAACCAATTTCCAGACGATACTGGATTTTTTAAAAGGGAAGGAACATGGAACTCCGAATATGGACAGTTCTTTCTGGAATGGTACTCCAGCAAGTTGCTGGATCATGGTGACAAGATTCTTGCATCTGCCAGAGGAATATTTCAGGCATCTGGGGTCAAACTATCTGGGAAAATTGCTGGAATCCATTGGCACTACAAAGCAAGGTCACATGCAGCTGAACTAACCGCCGGATATTATAATACACGATTCAATGATGGTTATCTACCAATTGCTAGAATGCTGGCAAAACATGAAGTTATCTTCAATTTCACCTGCATGGAAATGAAGGACAGAGAGCAGCCTGGCCACGCTAACTGCTCACCAGAGGGGTTAGTACATCAGGTAAAGATGGCAACCAAGATGGCTAGAGTAGAACTTGCAGGCGAAAATGCCTTGGAAAGATATGATGCAGATGCATATGCTCAAGTTTTGTCAACAAGTAGGTCAGACTCCGGCAACGGACTAACCGCATTTACATATCTAAGAATGAACAAGAAGTTGTTTGAAGGTGATAACTGGCGGCACATGGTGGACTTTGTCAGAAGCATGTCTGAAGGTGGTAGGAGACAGAGACTCTCAGACGCTGATTCCCGTGGAAGTGACCTTTATGTTGGGCACATCAAGGGAACTCAGAGGGAAAAATCACAAGAGGCTGCTCTTGTGTGA 1635 0.4606 MALTLRSSISFVNQKETKALKAFDDVSATVSFAKIKPSSRIQVKNSAREASHHQTHQRDEQREKVHAPSVAHHDNHNVSKRVPVYVMLPLDTVTMGGGLNKPRAMNASLMALKSAGVEGVMVDVWWGLAEKDGPLKYNWEAYAELVQMVQMHGLKLQVVMSFHQCGGNVGDTCSIPLPPWVLEEISKNPDLVYTDRSGRRNPEYISLGCDSMPVLKGRTPLQVYSDYMKSFHDRFRNYLGSVIVEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMKASLAAAAEAIGKKEWGTSGPHDSGKYNQFPDDTGFFKREGTWNSEYGQFFLEWYSSKLLDHGDKILASARGIFQASGVKLSGKIAGIHWHYKARSHAAELTAGYYNTRFNDGYLPIARMLAKHEVIFNFTCMEMKDREQPGHANCSPEGLVHQVKMATKMARVELAGENALERYDADAYAQVLSTSRSDSGNGLTAFTYLRMNKKLFEGDNWRHMVDFVRSMSEGGRRQRLSDADSRGSDLYVGHIKGTQREKSQEAALV 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01286 544 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 397 420 IPR001554 GO:0000272|GO:0016161
Aip01g01286 544 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 326 345 IPR001554 GO:0000272|GO:0016161
Aip01g01286 544 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 116 130 IPR001554 GO:0000272|GO:0016161
Aip01g01286 544 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 434 456 IPR001554 GO:0000272|GO:0016161
Aip01g01286 544 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 251 273 IPR001554 GO:0000272|GO:0016161
Aip01g01286 544 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 159 180 IPR001554 GO:0000272|GO:0016161
Aip01g01286 544 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 362 378 IPR001554 GO:0000272|GO:0016161
Aip01g01286 544 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 379 390 IPR001554 GO:0000272|GO:0016161
Aip01g01286 544 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 137 155 IPR001554 GO:0000272|GO:0016161
Aip01g01286 544 PRINTS Plant beta-amylase signature 400 410 IPR001371 GO:0000272|GO:0016161
Aip01g01286 544 PRINTS Plant beta-amylase signature 241 250 IPR001371 GO:0000272|GO:0016161
Aip01g01286 544 PRINTS Plant beta-amylase signature 482 496 IPR001371 GO:0000272|GO:0016161
Aip01g01286 544 Pfam Glycosyl hydrolase family 14 85 502 IPR001554 GO:0000272|GO:0016161
Aip01g01286 544 PANTHER - 1 544 IPR001554 GO:0000272|GO:0016161
Aip01g01286 544 ProSitePatterns Beta-amylase active site 1. 163 171 IPR018238 GO:0000272|GO:0016161
Aip01g01286 544 MobiDBLite consensus disorder prediction 46 73 - -
Aip01g01286 544 Gene3D Glycosidases 71 540 - -
Aip01g01286 544 PANTHER BETA-AMYLASE 1 544 - -
Aip01g01286 544 SUPERFAMILY (Trans)glycosidases 78 509 IPR017853 -
Aip01g01286 544 MobiDBLite consensus disorder prediction 41 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01286 Aip-Chr1 36723331 36725893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01286 1 544 Glycoside Hydrolase AT4G17090 70.962 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01286 K01177 - gmx:100818063 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01286 01 36723331 36725893 Aip01g01286 01 36723331 36725893 ECH