Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01260 ATGGCGGGATTGTCAGTGTCCGCTCTTGCGAAATACAAGCTTGTGTTCTTAGGTGATCAGTCCGTCGGAAAAACCAGCATCATTACCCGATTCATGTACGACAAATTCGACAACACCTACCAGGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGAACCATTCGGCTGCAGTTGTGGGATACTGCTGGACAAGAACGATTCAGAAGTCTTATTCCAAGCTACATTAGAGATTCATCTGTTGCCGTCATCGTCTATGATGTTGCAAGCCGTCAGACGTTCCTAAACACAGTAAGGTGGATCGAGGAGGTGCGCAGTGAAAGAGGCAACGATGTTATTCTTGTTCTTGTTGGCAACAAAACTGACCTTTTGGACAAGAGGCAGGTCTCTACAGAGGATGGGGAAGAAAAGGCACGTGAGCTAAATGTTATGTTTATTGAAGCTAGTGCAAAAGCTGGTTTTAACATAAAGGCTCTCTTTCGTAAAATTGCTGCTGCGTTACCCGGAATGGAAACATTATCTTCCTCGAAACAAGATGATATGGTCGATGTCAACCTTAAAACTTCTGGTGGCAATGATTCTCAAGCTGAGGGTGGTTGTTGTTGA 621 0.4332 MAGLSVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTVRWIEEVRSERGNDVILVLVGNKTDLLDKRQVSTEDGEEKARELNVMFIEASAKAGFNIKALFRKIAAALPGMETLSSSKQDDMVDVNLKTSGGNDSQAEGGCC 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01260 206 Gene3D - 8 206 IPR027417 -
Aip01g01260 206 PANTHER DRAB5-RELATED 5 205 - -
Aip01g01260 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 177 IPR027417 -
Aip01g01260 206 ProSiteProfiles small GTPase Ras family profile. 7 206 IPR001806 GO:0003924|GO:0005525
Aip01g01260 206 ProSiteProfiles small GTPase Rab1 family profile. 5 206 - -
Aip01g01260 206 SMART ran_sub_2 17 202 - -
Aip01g01260 206 SMART ras_sub_4 9 175 - -
Aip01g01260 206 Pfam Ras family 13 171 IPR001806 GO:0003924|GO:0005525
Aip01g01260 206 PANTHER GTP-BINDING PROTEIN RAB6 5 205 - -
Aip01g01260 206 SMART rho_sub_3 14 174 IPR001806 GO:0003924|GO:0005525
Aip01g01260 206 SMART rab_sub_5 12 175 - -
Aip01g01260 206 CDD Rab6 12 172 - -
Aip01g01260 206 ProSiteProfiles small GTPase Rho family profile. 5 178 - -
Aip01g01260 206 PRINTS Transforming protein P21 ras signature 12 33 - -
Aip01g01260 206 PRINTS Transforming protein P21 ras signature 35 51 - -
Aip01g01260 206 PRINTS Transforming protein P21 ras signature 53 75 - -
Aip01g01260 206 PRINTS Transforming protein P21 ras signature 115 128 - -
Aip01g01260 206 PRINTS Transforming protein P21 ras signature 150 172 - -
Aip01g01260 206 TIGRFAM small_GTP: small GTP-binding protein domain 11 168 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01260 Aip-Chr1 35165922 35170066 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01260 K07893 - gmx:100790511 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01260 01 35165922 35170066 Aip01g01260 01 35165922 35170066 ECH
Aip05g00466 05 5320235 5323272 Aip01g01260 01 35165922 35170066 PCT