Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01212 ATGCCGGTGGCTGCTTCCGCCGTCTACTTTCTCAACCTCCGTGGTGACGTTCTCATTAATCGCCTCTACCGCGACGATGTCGGGGGAAACATGGTGGATGCCTTCCGGACCCATATTATGCAAACGAAGGAGCTCGGTACTTGTCCTGTGAGGCAGATTGGTGGTTGCTCCTTCTTTTACATGAGGATCAGCAATGTCTATATTGTCATTGTAGTCAGCACCAATGCTAATGTTGCTTGCGCTTTCAAGTTCGTCGTTGAGGCTGTTGCACTGTTCAAATCATACTTTGGTGGTGCTTTTGATGAGGATGCTATTCGCAATAATTTTGTACTCATTTATGAGCTTCTAGATGCAGAAATTATGGACTTCGGTTACCCACAAAATCTTTCAGCAGAGATCTTAAAACTTTATATCACTCAGGAAGGAGTGCGTTCCCCGTTTTCGTCCAAGCCCGCAGATAAACCTGTTCCAAATGCTACTTTACAAGTTACTGGGGCTGTTGGTTGGCGGAGAGAAGGTCTTGTCTACAAAAAGAATGAGGTCTTTCTAGATATTGTGGAAAGTGTAAATCTTCTTATGTCTTCAAAAGGTGGTGTTCTGCGTTGTGATGTCACGGGGAAGATTCTCATGAAATGCTTTCTTTCTGGAATGCCTGATTTAAAGTTGGGTTTGAATGATAAGATTGGTCTTGAGAAAGAGTCACAACTTAAATCCCGCCCCACTAAAAGTGGTAAAACTATTGAGCTTGATGATGTCACCTTCCACCAGTGTGTAAATTTGACAAGGTTCAACTCGGAGAAGACTGTTAGTTTTGTGCCACCTGATGGTGAATTTGAACTAATGAAGTATCGTATCACTGAGGGAGTCAATCTTCCCTTTAAAGTACTGCCAACCATCAAGGAACTTGGTCGAACAAGGATGGAAGTGAATGTTAAGGTAAAGAGTACTTTTATTGAAAAGTTGTTTGCACTTGGGGTTGTAGTAAAAATTCCCGTGCCAAAACAAACTGCAAAGACAAGTTTCACAGTAACATCTGGCCGTGCCAAATACAATGCATCTATTGATTCTTTGGTTTGGAAGATTAGGAAGTTTCCAGGGCAAACTGAGGCAACCTTGAGTGCCGAAGTTGAACTTATTTCCACAATGACAGAAAAGAAATCTTGGACTAGGCCACCAATTCAGATGGAGTTTCAGGTTCCAATGTTCACAGCATCTGGTTTACGAGTTCGTTTTCTGAAGGTGTGGGAGAAGAGTGGTTACAATACTGTTGAGTGGGTTCGTTATATTACAAAAGCAGGATCATACGAGATTAGGTTCACGCCGTTCTCATCGTATAGTGTGCTCTCCCCTGTCAATATGAATCTTTGCGTGTTAATGATAATGTATTTTAATGTTATTGAGTGCCGATTCTTTGAATTACTTCTTGCCCTGATGGAAGGCCCGAAGGTGATGGATTCTCTTAAAGATAATTGCAATTATGACTTGAGTTTTACACAAGATAGAATCACAATCTACCCAGATTCGTTTGATATTGTTGACAGCAGCAATGCTTGA 1554 0.4176 MPVAASAVYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSTNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDAEIMDFGYPQNLSAEILKLYITQEGVRSPFSSKPADKPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGGVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFKVLPTIKELGRTRMEVNVKVKSTFIEKLFALGVVVKIPVPKQTAKTSFTVTSGRAKYNASIDSLVWKIRKFPGQTEATLSAEVELISTMTEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRFTPFSSYSVLSPVNMNLCVLMIMYFNVIECRFFELLLALMEGPKVMDSLKDNCNYDLSFTQDRITIYPDSFDIVDSSNA 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01212 517 PANTHER AP COMPLEX SUBUNIT MU 17 438 - -
Aip01g01212 517 CDD AP-2_Mu2_Cterm 176 438 IPR043512 -
Aip01g01212 517 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 167 187 IPR018240 GO:0006886|GO:0016192|GO:0030131
Aip01g01212 517 PRINTS Clathrin coat assembly protein signature 318 333 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aip01g01212 517 PRINTS Clathrin coat assembly protein signature 169 197 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aip01g01212 517 PRINTS Clathrin coat assembly protein signature 102 129 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aip01g01212 517 PRINTS Clathrin coat assembly protein signature 358 369 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aip01g01212 517 PRINTS Clathrin coat assembly protein signature 15 35 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aip01g01212 517 PRINTS Clathrin coat assembly protein signature 249 276 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aip01g01212 517 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 167 438 IPR036168 -
Aip01g01212 517 CDD AP2_Mu_N 6 145 IPR043532 -
Aip01g01212 517 Gene3D Mu homology domain, subdomain B 175 434 - -
Aip01g01212 517 Gene3D - 5 146 - -
Aip01g01212 517 ProSiteProfiles Mu homology domain (MHD) profile. 178 438 IPR028565 -
Aip01g01212 517 Gene3D Mu homology domain, subdomain B 291 438 - -
Aip01g01212 517 PANTHER AP-2 COMPLEX SUBUNIT MU 17 438 - -
Aip01g01212 517 SUPERFAMILY SNARE-like 6 143 IPR011012 -
Aip01g01212 517 Pfam Adaptor complexes medium subunit family 168 438 IPR028565 -
Aip01g01212 517 PIRSF AP_complex_mu 4 440 IPR001392 GO:0006886|GO:0016192|GO:0030131
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01212 Aip-Chr1 31987731 31995410 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01212 K11826 - sind:105165161 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01212 01 31987731 31995410 Aip01g01212 01 31987731 31995410 ECH