Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00653 ATGGATCTTGCCATTGTCCCATTTGATTCATTCCCCAAAGATCAACAAATGCTTTACCAAGAGTGGTTCAACTATGCAGATTCAGATGGTGATGGCCGCTTTACAGGGAGTGATGCCACCAAATTTTTTGCCATGTCTAACTTGTCACGACAAGATCTTAGGCAGGTTTGGGCTATTGCAGATACCAAGAGACAAGGATATCTGGATTTCCAAGAATTTGTTATTGCTATGCAGCTAATGTCAGCAGCCCAATCTGGGGAACCAATTACACATGACTTGATCTCTAGTGATTGTAAGTTTAGTCATTATTTGAAAAACCTAAAACCTCCCAAAATGGAAGGTTTAGATAAATTGCTAGCAAAAAAAAGGAATAAACACAAAGAAAATGATACAATTATTCCTCCCTCTCCCTCTCCATCAATATCAAGTAAATGGTTTGCATCAAAGTCGTCACAAAAGATACCTGCTTCCGCCGTGACATCAATTATCGATGGTTTGAAGAAACTGTATATACAAAAGTTGAGGCCTTTAGAAGCCACTTACCGCTTTAATGATTTTGTTTCTCCTTTATTGACAAATAGTGACTTTGATGCCAAACCTATGGTTCTACTTTTGGGTCAATACTCAACTGGCAAAACAACATTTATCAAACATATGCTAAATACTAATTATCCAGGAGCTCACATTGGACCAGAACCTACAACAGATAGAAGCATTCCTGGGAATACAATTGCTGTTCAAGCAGACATGCCATTTAGTGGTCTATCAAGTTTTGGTTCAGCTTTTTTGTCAAAATTTGAGTGCTCTCAAATGCCTCATCCTCTACTAGAAGAAATTACATTTGTAGATAGCCCTGGAGTTCTATCCGGAGAAAAACAAAGAACACAAAGAGCATATGATTTTACTGGAGTAACATCATGGTTTGCTGCTAAATGTGATTTAATACTGCTTCTATTTGATCCTCATAAGCTTGATGTTAGTGATGAATTCAAGCGTGTCATATCATCCCTACGTGGTCATGATGACAAGACTCGAGTCGTTCTAAATAAGGCACACCAAGTTGATACTCAACAATTAATGAGGATTTATGGAGCATTAATGTGGTCACTTGGGAAGGTTCTAAATACTCCGGAGGTTATGCGTGTCTATATTGGCTCCTTCAATGACAAGCCAATAGATTATGCAGACAATGGTCCTCTTGGTGGTGAACTCTTTGAGAAGGAACAAGATGACCTTCTTTTAGATCTAAAAGATATACCAAGAAAAGCTTGTGATAGAAAAATCAACGAATTCGTGAAACGTGCTCGAGCTGCTAAGATACATGCTTACATTATTAGTCATCTTAAAAAGCAAATGCCTTCAATAATGGGCAAAACTAAAGCACAAGAAAAACTCATTGCAAATTTGGAAGGAGAATTCGCCAAGGTACAAAGGGAGTTCCATTTACCACCTGGTGACTTTCCAAATGTTGAGGAATTTAGAGAGAAACTGCGTGGCTACAACATCGACAAGTTTGAGAGATTGAGACCAAAATTGATAGACGCTGTGGATGACATGCTAGGTTATGATATTCCTAACCTCTTGAAGACTTTTAGAAACCCCTATGGTTAA 1611 0.3818 MDLAIVPFDSFPKDQQMLYQEWFNYADSDGDGRFTGSDATKFFAMSNLSRQDLRQVWAIADTKRQGYLDFQEFVIAMQLMSAAQSGEPITHDLISSDCKFSHYLKNLKPPKMEGLDKLLAKKRNKHKENDTIIPPSPSPSISSKWFASKSSQKIPASAVTSIIDGLKKLYIQKLRPLEATYRFNDFVSPLLTNSDFDAKPMVLLLGQYSTGKTTFIKHMLNTNYPGAHIGPEPTTDRSIPGNTIAVQADMPFSGLSSFGSAFLSKFECSQMPHPLLEEITFVDSPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDVSDEFKRVISSLRGHDDKTRVVLNKAHQVDTQQLMRIYGALMWSLGKVLNTPEVMRVYIGSFNDKPIDYADNGPLGGELFEKEQDDLLLDLKDIPRKACDRKINEFVKRARAAKIHAYIISHLKKQMPSIMGKTKAQEKLIANLEGEFAKVQREFHLPPGDFPNVEEFREKLRGYNIDKFERLRPKLIDAVDDMLGYDIPNLLKTFRNPYG 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00653 536 Coils Coil 459 479 - -
Aip01g00653 536 CDD EHD 201 434 - -
Aip01g00653 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 458 IPR027417 -
Aip01g00653 536 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Aip01g00653 536 Gene3D - 12 112 - -
Aip01g00653 536 SMART eh_3 9 100 IPR000261 GO:0005515
Aip01g00653 536 Pfam Cytoskeletal-regulatory complex EF hand 28 80 IPR000261 GO:0005515
Aip01g00653 536 ProSiteProfiles EH domain profile. 15 93 IPR000261 GO:0005515
Aip01g00653 536 SUPERFAMILY EF-hand 10 89 IPR011992 -
Aip01g00653 536 PANTHER EH DOMAIN 19 534 - -
Aip01g00653 536 Pfam Domain of unknown function (DUF5600) 426 527 IPR040990 -
Aip01g00653 536 CDD EH 19 85 IPR000261 GO:0005515
Aip01g00653 536 Pfam N-terminal EH-domain containing protein 165 197 IPR031692 -
Aip01g00653 536 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 196 421 IPR030381 GO:0005525
Aip01g00653 536 PANTHER CALCIUM-BINDING EF HAND PROTEIN 19 534 - -
Aip01g00653 536 SMART efh_1 52 80 IPR002048 GO:0005509
Aip01g00653 536 SMART efh_1 18 46 IPR002048 GO:0005509
Aip01g00653 536 Gene3D - 166 527 - -
Aip01g00653 536 Pfam 50S ribosome-binding GTPase 202 350 IPR006073 GO:0005525
Aip01g00653 536 Gene3D - 202 419 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00653 Aip-Chr1 10212786 10219125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00653 1 535 EF-hand Containing Proteins AT3G20290 74.270 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00653 K12483 - gmx:100804468 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00653 01 10212786 10219125 Aip01g00653 01 10212786 10219125 ECH