Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip01g00585 | ATGGATATATCAGAGTACACTCGAATTGTTTTCGACAAACTTCAAAAATTGGAACCAGAGCATGCCACAAAGATAATTGGATACCTCCTTGTTCAAGAACATGGCGAGGAACAGATGATTAAATTGGCTTCATACCCAGACCACCTGATCCGTGAAGTCGCTTTCAAAGCCAAAACCGAATTCCAGATACTAACCACACTTCCAGATCTAAGGCACTTAATCACCCTCCAACTTTCCTCTCCTTCTTGGGATCATCACTCTTTCTCGGAACTTCAGAAGCAGTTCGAAATATTCGAAACAAGAATGGCAAATGATTACTGCATTGCAGATGCCTTGCCTTGCAAGTTAAGAGGCGGAAGGAGGTTTTCGAACGAGTTTCCGGTGAAAACCTGTCACTATTTCAACAAAGGCTATTGCAAGCATGGAGCTAGTTGTCGCTATTATCACGGACAGGCTGGCAACGAGATGTACGGAAGCTACGACTATTCTTCTTCTTCTTCTTCGGTTCAGGGGGATCAAGTGATTTCGGCAGGGTCTTTGGCGAATTTGGAGACGGAAATCGTGGAGCTGTTGAAATCAAGAAAAGGAAGTCCGATTTCGATAGCTTCGCTTCCAATGGCGTACTATGAGAAGTATAACAAGGTACTGCAGGCTGAAGGTTATCTTACTGAGAGCCAGAGACATGGTAAGTCTGGTTATAGTTTGACCAAGCTTCTTGCAAGATGGAAGAATTGCATTCGCGTATTTGACAGGCCTCATGGGCAGCACGCAGTGGTTTTGGCAGAAGATGCTCCAAAATACATAGGAAAGGGAGAGTTTGGTCAAAATATTAGTGCGTCAAGACAAATATATTTGACATTTCCAGCTGATAGCACTTTCACAGAGGAAGATGTTTCAAACTACTTCAACACCTTTGGGAGTGTTGAAGATGTAAGGATTCCATGCCAACAGAGAAGGATGTTTGGATTTGTGACCTTTGTTGAACCAGAAACTGTTAAAATGATTTTGGAAAAGGGAAATCCCCATTATGTTCGTGGCTCTAGGGTGCTTGTAAAACCTTACAAGGAGAAGCCAAAAGTTGATAGGTCTTTTCCTTCTCTCTACTCTTTCTCTCATTTCATTATCTTCAATTTATCTAAACTTTATATTCCAAGAAGATGCGGTAACCCTCAAGGCCTGAGGAGATTCCTCATTGAAGAGCAGGAGCATGCTCTTGAATTCCAAAGAAGACGAATTGCAGAGTTACAGCTAGGCCGAAAATGGATGTCGAATTCACCCCATTTTGGCTTTGACATGGAGGAGCTAAAGGTTCCTGATGATCATTTCAATCATCAGTCCACTGGATCCTCCAGTAGTTATGCTTCAACTGACAAATCTGGATATACAAAAACAGAAGCTAACTATACTGATCAGGACAGCTGTGAAGGATTGAATCTCCCAGAAAGTCCATTTGCATTTCCGGTAGATAATGAAATTTCAGCCATGGTATAA | 1491 | 0.4212 | MDISEYTRIVFDKLQKLEPEHATKIIGYLLVQEHGEEQMIKLASYPDHLIREVAFKAKTEFQILTTLPDLRHLITLQLSSPSWDHHSFSELQKQFEIFETRMANDYCIADALPCKLRGGRRFSNEFPVKTCHYFNKGYCKHGASCRYYHGQAGNEMYGSYDYSSSSSSVQGDQVISAGSLANLETEIVELLKSRKGSPISIASLPMAYYEKYNKVLQAEGYLTESQRHGKSGYSLTKLLARWKNCIRVFDRPHGQHAVVLAEDAPKYIGKGEFGQNISASRQIYLTFPADSTFTEEDVSNYFNTFGSVEDVRIPCQQRRMFGFVTFVEPETVKMILEKGNPHYVRGSRVLVKPYKEKPKVDRSFPSLYSFSHFIIFNLSKLYIPRRCGNPQGLRRFLIEEQEHALEFQRRRIAELQLGRKWMSNSPHFGFDMEELKVPDDHFNHQSTGSSSSYASTDKSGYTKTEANYTDQDSCEGLNLPESPFAFPVDNEISAMV | 496 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip01g00585 | 496 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 96 | 495 | - | - | |
| Aip01g00585 | 496 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) | 96 | 495 | - | - | |
| Aip01g00585 | 496 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 292 | 348 | IPR000504 | GO:0003723 | |
| Aip01g00585 | 496 | ProSiteProfiles | Zinc finger C3H1-type profile. | 125 | 152 | IPR000571 | GO:0046872 | |
| Aip01g00585 | 496 | Gene3D | - | 282 | 361 | IPR012677 | - | |
| Aip01g00585 | 496 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 1 | 98 | - | - | |
| Aip01g00585 | 496 | Gene3D | - | 122 | 175 | - | - | |
| Aip01g00585 | 496 | Coils | Coil | 398 | 418 | - | - | |
| Aip01g00585 | 496 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) | 1 | 98 | - | - | |
| Aip01g00585 | 496 | ProSiteProfiles | OST-type HTH domain profile. | 179 | 263 | IPR025605 | - | |
| Aip01g00585 | 496 | SUPERFAMILY | RNA-binding domain, RBD | 291 | 363 | IPR035979 | GO:0003676 | |
| Aip01g00585 | 496 | Pfam | OST-HTH/LOTUS domain | 179 | 257 | IPR025605 | - | |
| Aip01g00585 | 496 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 281 | 356 | IPR000504 | GO:0003723 | |
| Aip01g00585 | 496 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 129 | 151 | IPR000571 | GO:0046872 | |
| Aip01g00585 | 496 | SUPERFAMILY | CCCH zinc finger | 127 | 150 | IPR036855 | GO:0046872 | |
| Aip01g00585 | 496 | MobiDBLite | consensus disorder prediction | 439 | 460 | - | - | |
| Aip01g00585 | 496 | MobiDBLite | consensus disorder prediction | 442 | 460 | - | - | |
| Aip01g00585 | 496 | CDD | RRM_AtC3H46_like | 283 | 352 | IPR034365 | - | |
| Aip01g00585 | 496 | SMART | rrm1_1 | 282 | 352 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip01g00585 | Aip-Chr1 | 8752010 | 8755690 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip01g00585 | - | - | aip:107645763 | 930.243 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aip01g00585 | 01 | 8752010 | 8755690 | Aip01g00585 | 01 | 8752010 | 8755690 | ECH |