Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00548 ATGGCTACTTGCGTAGATTCCTCAACCTCCTCCCCTTTTTCTCGGAAGCCAAACGGGTCCCAAACCGATGATCGTTCCTATAACTACCTCAAATTCTGCCGACCCACTTTCTCCGATCGTGTTTCCATTCCCAAGAACAAACCCCTGCATACACGCACGGTTATTGAAGAGTCTGACCCTAAGGTTGATGTTGACGATCGTGTTCATGTTCATGTTCATGATGAAGATGAAGATGCTGATGATGATGATGATGATCTATGGCGGAAGATGAAGGAAGAAGCGAAATCCGATGTGGAACAAGAACCTATTTTATCCAACTACTATTTCAGTTCAATATTGTGCCACAAGTCTTTAGAAAGCGCGTTATCCAATCATCTTTCCAACAAATTATCCAGCTTGAATCTCAACAGCACCACTCTCGTTAATCTCTTAGGAAGAAAAATTCTAGCCCTCTTGATTCAGAACCGCGTATCCGAGGTTTTCGCGGTCGATATTCACCCTGGCGCGAACATCGGCCGCGGAATCCTTCTGGATCACGCGACTGGCCTCGTGGTAGGCGAGACCGCCGTTATTGGGAACAATGTGTCCATTTTGCACAACGTCACGTTAGGTGGGACCGGAAAAGCTTCCGGCGACCGGCATCCGAAGATCGGTGACGGGGTTTTGATAGGTGCAGGGACTTGTATCTTAGGGAATATTAAGATTGGTGATGGTGCTAAGATTGGTGCTGGTTCAGTGGTGTTGAAGGATGTTCCTCCAAGAACAACTGCAGTTGGGAACCCTGCTAGATTGATTGGAGGAAAAGATAATCCCATTAGGCTTGATAAGATTCCTAGCTTCACTATGGACCATACTTCATATATTTCTGAGTGGTCTGATTATGTTATTTAG 891 0.4579 MATCVDSSTSSPFSRKPNGSQTDDRSYNYLKFCRPTFSDRVSIPKNKPLHTRTVIEESDPKVDVDDRVHVHVHDEDEDADDDDDDLWRKMKEEAKSDVEQEPILSNYYFSSILCHKSLESALSNHLSNKLSSLNLNSTTLVNLLGRKILALLIQNRVSEVFAVDIHPGANIGRGILLDHATGLVVGETAVIGNNVSILHNVTLGGTGKASGDRHPKIGDGVLIGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGGKDNPIRLDKIPSFTMDHTSYISEWSDYVI 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00548 296 Gene3D serine acetyltransferase, domain 1 70 144 IPR042122 -
Aip01g00548 296 PANTHER SERINE ACETYLTRANSFERASE 143 296 - -
Aip01g00548 296 PANTHER SERINE ACETYLTRANSFERASE 1 143 - -
Aip01g00548 296 SUPERFAMILY Trimeric LpxA-like enzymes 84 265 IPR011004 -
Aip01g00548 296 CDD LbH_SAT 161 261 IPR045304 -
Aip01g00548 296 PANTHER SERINE ACETYLTRANSFERASE 143 296 - -
Aip01g00548 296 PANTHER SERINE ACETYLTRANSFERASE 1 143 - -
Aip01g00548 296 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 223 251 IPR018357 GO:0016740
Aip01g00548 296 MobiDBLite consensus disorder prediction 1 26 - -
Aip01g00548 296 Pfam Serine acetyltransferase, N-terminal 86 144 IPR010493 GO:0005737|GO:0006535|GO:0009001
Aip01g00548 296 SMART SATase_N_2_a 86 169 IPR010493 GO:0005737|GO:0006535|GO:0009001
Aip01g00548 296 Gene3D Hexapeptide repeat proteins 164 279 - -
Aip01g00548 296 Pfam Bacterial transferase hexapeptide (six repeats) 214 248 IPR001451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00548 Aip-Chr1 8138810 8139700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00548 145 284 Miscellaneous Gene Families AT2G17640 63.571 3.95e-55 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00548 K00640 - dcr:108221073 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00548 01 8138810 8139700 Aip01g00548 01 8138810 8139700 ECH
Aip01g00548 01 8138810 8139700 Aip07g00183 07 1417039 1418825 PCT