Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00544 ATGCTTCATGAGCTTTGCCATAATGCCCATGGTCCTCATAATGCCAACTTCTACAAGCTTTGGGATGAACTTAGAAAGGAATGTGAAGAGCTGATGTCCAACGGAGTAACTGGCTCGGGAGAGGGGTTTGACCTTCCAGGAAGGCGCTTAGGTGGTCATTCCCGGCAGCCACCCCTTTCATCACTCCGTAAAACAGCACTTGCAGCTGCAGAAAAGAGATCGCGATTGGGATCACTCCTTCCCTCTGGACCTAACCGTCTTGGGGGTGATAGTGTTATAATGAAGGCACTTACTCCAGTGCAAGCGGCTGCAATGGCTGCAGAAAGGAGATTACAGGATGACATTTGGTGTGGTTCTCAAACCTGTGAAGCTTCAGATCATGAAGATTTTAACTTTGAACCTGCTGCGAATATTGAGCGCAAGGGTAAAAATGTGGGTAGCTCAAGACTTCGAGACAATTCTTCTCTACCTTTGGATCTGAAATCTCAGAAAAGGAGTCGTGTCATGGATTCAAGTTTACTGGATTGCTCGTCTAGTACCCCTAAATATGTTGATTTGACTACGGATGCACCACAGATTGGATCTATCATTGAACAATGCACTGTGACTCAAGGAAGGGGTGTTGGTGGATTAGAAAGCATTTCACATTCTGAGTCAAATTCTCGGATAGGATCTACTTCTGCAAATATTACAAGCTCCTCCACTCCACTTTCTGGTGATAATAATACATCTCATTCTGAAGAACTTGCAATGTGGGAGTGCTCAATGTGCACTCTGTTAAATAAAACATTAGCTCCATTATGTGAGTTGTGTGGCACACAACAGCCGAAAGATTTTGCCACCAAATACAGTACTTGGTCTTGTAAATTCTGTACGCTGGAAAACAGTGTGAAGTTGGACAAATGCTCAGCTTGTGATCAGTGGAGATACTCTCTTGGTGCACCAGTGTCATCCCGTGCACCTAACGTCGGCACTTGA 978 0.4489 MLHELCHNAHGPHNANFYKLWDELRKECEELMSNGVTGSGEGFDLPGRRLGGHSRQPPLSSLRKTALAAAEKRSRLGSLLPSGPNRLGGDSVIMKALTPVQAAAMAAERRLQDDIWCGSQTCEASDHEDFNFEPAANIERKGKNVGSSRLRDNSSLPLDLKSQKRSRVMDSSLLDCSSSTPKYVDLTTDAPQIGSIIEQCTVTQGRGVGGLESISHSESNSRIGSTSANITSSSTPLSGDNNTSHSEELAMWECSMCTLLNKTLAPLCELCGTQQPKDFATKYSTWSCKFCTLENSVKLDKCSACDQWRYSLGAPVSSRAPNVGT 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00544 325 ProSiteProfiles Zinc finger RanBP2 type profile. 282 311 IPR001876 -
Aip01g00544 325 SUPERFAMILY Ran binding protein zinc finger-like 283 309 IPR036443 -
Aip01g00544 325 CDD M48_yhfN_like 1 27 - -
Aip01g00544 325 MobiDBLite consensus disorder prediction 35 61 - -
Aip01g00544 325 ProSiteProfiles Zinc finger RanBP2 type profile. 248 277 IPR001876 -
Aip01g00544 325 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 1 325 - -
Aip01g00544 325 MobiDBLite consensus disorder prediction 211 242 - -
Aip01g00544 325 Gene3D - 245 284 - -
Aip01g00544 325 ProSiteProfiles WLM domain profile. 1 112 IPR013536 -
Aip01g00544 325 ProSitePatterns Zinc finger RanBP2-type signature. 286 305 IPR001876 -
Aip01g00544 325 SMART zf_4 250 274 IPR001876 -
Aip01g00544 325 SMART zf_4 284 308 IPR001876 -
Aip01g00544 325 Pfam WLM domain 1 112 IPR013536 -
Aip01g00544 325 ProSitePatterns Zinc finger RanBP2-type signature. 252 271 IPR001876 -
Aip01g00544 325 PANTHER ZINC ION BINDING PROTEIN 1 325 - -
Aip01g00544 325 SUPERFAMILY Ran binding protein zinc finger-like 248 275 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00544 Aip-Chr1 8069161 8072511 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00544 K22685 - gmx:100795976 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00544 01 8069161 8072511 Aip01g00544 01 8069161 8072511 ECH