Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00533 ATGCAGCCTCTCCGGCCGGCGAATCTTGCGGCCCTAGCGGCAGCGCTACTCCTCTTAGCCGCCGCCACAACCCATGCACACAACATTACCCGCATTTTGGAGAAGCACCCCGACTTCTCCACCTTTAACAAGTACCTAACACTAACTCACCTTGCGCCGGAGATCAACCGGCGAATCACCATAACCGTGTGCGCCATCGACAACACCGCCATGAACGAGCTGCTCTCGAAGCACCCTTCCATCTACACTCTGAAGAACATCCTGTCCCTCCACGTCCTCCTCGACTACTTCGGCGCCAAGAAGCTCCACCAGATCACCAACGGCACCGCCCTCGCCGCCACCATGTTTCAGGCCACCGGAACCGCCCCCGGCTCCACGGGATTCGTCAACATCACCGACCTCCGCGGCCTTCTGAAGGCATTCCTACCAAAGTATAAGAACCTAACTGCAGCTGGGAAGGCGTCGTTGCTGGAGTACCATGCTACGCCTGTTTATGAGAGCATGGCTATGTTGAAGTCAAACAATGGTTTGATGAACACGCTTGCTACCGATGGAGCCAGCAAGTTCGACTTCACCGTGCAGAATGACGGTGATCAAGTCACGCTCAAGACCAAGATTGTTACTGCCAAGATCACTGGCACGCTCATTGACGAAGACCCGCTCGCGATCTACACCATTGATAAGGTTCTGCTTCCCAGGGAGCTTTTCAAGGCCCTGGCTCCGTCTCCTTCGCCCTCGCCCGCTCCGGAACCAGCCGCCGCCGACGCTCCTGCATCCCCGAAGAAAGGGGGAAAGAAGAAGAAGCAGAAGGCAGCCGACGCGCCGGCAGATGAGGAATCAGCGCCTGCGGATTCGCCCAGTGATGCCGCCGATGAGAGCGCTGACGACGGTAACGGCGCCGTTAGGTTTGACGGCGTCAGGTACGGTAACGTCATCTTCGTGGTTATGGCTTTGTGCTTTGGGTTTTCATTGCTGTAA 978 0.5706 MQPLRPANLAALAAALLLLAAATTHAHNITRILEKHPDFSTFNKYLTLTHLAPEINRRITITVCAIDNTAMNELLSKHPSIYTLKNILSLHVLLDYFGAKKLHQITNGTALAATMFQATGTAPGSTGFVNITDLRGLLKAFLPKYKNLTAAGKASLLEYHATPVYESMAMLKSNNGLMNTLATDGASKFDFTVQNDGDQVTLKTKIVTAKITGTLIDEDPLAIYTIDKVLLPRELFKALAPSPSPSPAPEPAAADAPASPKKGGKKKKQKAADAPADEESAPADSPSDAADESADDGNGAVRFDGVRYGNVIFVVMALCFGFSLL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00533 325 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 10 136 - -
Aip01g00533 325 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 138 310 - -
Aip01g00533 325 SMART fasc_3 139 233 IPR000782 -
Aip01g00533 325 SUPERFAMILY FAS1 domain 140 232 IPR036378 -
Aip01g00533 325 ProSiteProfiles FAS1/BIgH3 domain profile. 26 230 IPR000782 -
Aip01g00533 325 Gene3D FAS1 domain 18 138 IPR036378 -
Aip01g00533 325 MobiDBLite consensus disorder prediction 240 298 - -
Aip01g00533 325 Pfam Fasciclin domain 37 107 IPR000782 -
Aip01g00533 325 Pfam Fasciclin domain 140 232 IPR000782 -
Aip01g00533 325 Gene3D FAS1 domain 139 232 IPR036378 -
Aip01g00533 325 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 10 136 IPR033254 -
Aip01g00533 325 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 138 310 IPR033254 -
Aip01g00533 325 SUPERFAMILY FAS1 domain 32 133 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00533 Aip-Chr1 7821504 7822913 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00533 - - aip:107616720 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00533 01 7821504 7822913 Aip01g00533 01 7821504 7822913 ECH