Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00524 ATGAACCCAACACCAAGGAAACTCGCACTCTCACTCTCACGTGCGCTCTCACGTGCCCTAACTACTGCCACCGCCGCAGCCTCGCAATCTGGATCGGCTTTCCCACTCAAGACGGTTACCACCAAAAACTTCGAAGCGTCTCTTTCGGAGCTCCGGGACCATGTCCGAACCTCCGATTTTGTTGCCATCGACCTTGAGATGACCGGCGTAACCAGTGCACCCTGGCGGGAGTCCTTCGAGTTCGACCGCTCCGACGTCCGGTACCTGAAGGTCAGGGACTCCGCCCACAAGTTCGCCGTCGTTCAGTTCGGCGTCTGCCCCTTCCGTTGGGACTCTTCCAACCACTACTTCGTCGCTTATCCGTACAATTTCTATGTTTTTCCACGTCAGGAGCTTGAGGATCTGGCTCCATGTTATGAATTTCTCTGCCAGACTACTTCAATGGATTTCTTGGCTAAATACCAGTTTGATTTCAATGCATGCATACGTGAAGGAATATCTTATTTATCTAGAGCGCAAGAAAGCGAAGCAGTAAGGAGATTGAATTCTAGATACGAAAGTGAGCATTCAAACATTTGTAAATTAAAAGACGTTAAAGACATACAATTGATCAGCATGGCAGACATATTGTTCTCTGAACGAATGAAAAACAAATTCAGTAAATGGCGTGATGGGTTATTACAGGAGCAAAGTCGAGAAGAACAAATTATAGGAACTTCAAAAGACTCAAAACAGCTATTTGAAGTGATTTTCTTTAAGATGCATCCTGCTATTAGACTTAGTGGATTTACATCTCGGCAGCTAAAATTGATTCAGTTGGTCATCAGAAAACACTTTCAAGATTTGTCATATGTATGTGTGAATAGCGAAGATTCTGGTTCACAACATATGGTTGTATATACAGACTCAAAGGATGAACTAAACTTACTTCTGAAGGAGGTAAAAGATGGAAATCGCAAGGCAGAAGAGAAGAAGATTCAAAATGCTGTGGGATTTCGCCATGTTATTGATCTCCTTTCTGCAGAAAAGAAGTTGATTGTTGGTCATAATTGTTTTCTGGATATTGCTCATGTCTACAACAAATTTATAGGTCCCCTTCCAGGGACTCCTGAAGAGTTTGTCACCTCTATTAACAAGTATTTTCCGCACATTGTTGACACTAAAATACTCTTCAACAATAATCATGTGCTCCAAGAAAAGATGAAAAGGTCAAGAAAATCACTGGCCTCTGCATTTTCCTTGTTTTGTCCACAAATTGCAGTAGGTTCCAACAGCAGTGATCTTGATTCACCCTTACATGTGAAAGTGAATGTTGAAGTTAATGATTTGAGATCATCGAGCTGGAACCCTGGAGCCAAGCATGAGGCCGGATATGATGCTTTTATGACTGGTTGCATCTTTGCTCAAATATGCAGTGATTTAGGAGTTGATTATAAACACCATGAATCTTCTCCACAACAACTAGCCCTCAATGAGAAACTACAAAAGTATGTTAACCATCTATATCTTAGTTGGATACATGGGGACATTATTGATCTGAATACCGGTGATAAGGTTGCAGAATCTACACCAAGCAATAACCTCAAGAGGCAATATCCAAAGATTTTGTTTGAAAATATTGTTATTATTTGGGGTTTTCCTTCTCAGCTGAAGGCAAATGATCTAAGAGTGTGCATATCTAAAGTTTTTGGTCCAGCTTCTGTGGTTTCTGTCTACCACTTGGATGCGACTGCAGTATTTGTGCAGTTTAGTAAGACAGAACTAGTTTACGACTTCCTTTTGTTGAAGGACACCTTAGAAAGAAGTGATGGCGCAATCTTGGTTTTGCACCCTCTTGCAAAGATTTTGGAAGGGGGCAATACATGTGCCGCTGATTATGATACTTACAAAGAAATCTGTGGTTCACCCATTTCCGAAGCTTTGTTTGCCGTGCAGGCAAAGGCGGTTGGCATAAAGTGGAAGACCAAATTGGTAGAAAGCCATGTCACAGTGCAAACTGAAGACCACGAAAGTCCAGGCGCAGAAGGTTCTGTAAATTCGGTTATGAAATTTGTAAAGTCCAAACCAAACATAATTGAGCAGTTAAGAAATGCTCCATCTCATAGGAAAGTCTCATCTTTTGAGACCGAAGATTCTTGCTGTGCAGTAGAAATGAATGCTTGA 2163 0.4175 MNPTPRKLALSLSRALSRALTTATAAASQSGSAFPLKTVTTKNFEASLSELRDHVRTSDFVAIDLEMTGVTSAPWRESFEFDRSDVRYLKVRDSAHKFAVVQFGVCPFRWDSSNHYFVAYPYNFYVFPRQELEDLAPCYEFLCQTTSMDFLAKYQFDFNACIREGISYLSRAQESEAVRRLNSRYESEHSNICKLKDVKDIQLISMADILFSERMKNKFSKWRDGLLQEQSREEQIIGTSKDSKQLFEVIFFKMHPAIRLSGFTSRQLKLIQLVIRKHFQDLSYVCVNSEDSGSQHMVVYTDSKDELNLLLKEVKDGNRKAEEKKIQNAVGFRHVIDLLSAEKKLIVGHNCFLDIAHVYNKFIGPLPGTPEEFVTSINKYFPHIVDTKILFNNNHVLQEKMKRSRKSLASAFSLFCPQIAVGSNSSDLDSPLHVKVNVEVNDLRSSSWNPGAKHEAGYDAFMTGCIFAQICSDLGVDYKHHESSPQQLALNEKLQKYVNHLYLSWIHGDIIDLNTGDKVAESTPSNNLKRQYPKILFENIVIIWGFPSQLKANDLRVCISKVFGPASVVSVYHLDATAVFVQFSKTELVYDFLLLKDTLERSDGAILVLHPLAKILEGGNTCAADYDTYKEICGSPISEALFAVQAKAVGIKWKTKLVESHVTVQTEDHESPGAEGSVNSVMKFVKSKPNIIEQLRNAPSHRKVSSFETEDSCCAVEMNA 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00524 720 Gene3D - 275 518 IPR036397 GO:0003676
Aip01g00524 720 Gene3D - 38 250 IPR036397 GO:0003676
Aip01g00524 720 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 35 657 - -
Aip01g00524 720 SUPERFAMILY Ribonuclease H-like 29 477 IPR012337 -
Aip01g00524 720 Pfam CAF1 family ribonuclease 39 467 IPR006941 -
Aip01g00524 720 Coils Coil 304 324 - -
Aip01g00524 720 PANTHER POLY(A)-SPECIFIC RIBONUCLEASE PNLDC1 35 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00524 Aip-Chr1 7578984 7584805 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00524 K01148 - gmx:100784997 1043.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00524 01 7578984 7584805 Aip01g00524 01 7578984 7584805 ECH