Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00488 ATGGCCCTCCTCACCAACCACGACCAACAACAACTGCAACCGCCACCGCAACTGCCTCAACAATCTTCTCAACCGCTTTCCGCTGCGGCTTCCGCCCCTATCTCCTCGATGGGGATGTTATCTGCCGCGAACGCTGCGGCAGCTGCGCTGAATCGCGTGGCGAGCAGTAAGGTGCCGAGAGGGAGGCGCCTGGCGGGGGACCATGTGGTGTATGACGTGGATGTGAGGCTTCCCGGGGAGGTGCAGCCGCAGCTTGAGGTGGCGCCAATAACGAAATATGGTTCGGATCCTAACTTGGTTCTTGGAAGGCAAATAGCTGTTAACAAGTCTTACATTTGCTATGGGTTGAAGCAAGGGAACATTAGAGTGCTTAATATTCACACAGCTGTTAGGTCCCTTCTCAAAGGCCACAATCAGAGGGTCACAGACTTGGCTTTCTTTGCTGAAGATGTTCATCTCCTGGCTAGTGTTGGAACAGATGGCCGTGTCTTTGTGTGGAAGATCTCTGAAGGTCCTGATGATGAAGATAAGCCTCAAATTACTGCCAATATTGTTATCGCTATCCAAATGGTGGGAGAGGAGAAAGTTGAAAATCCTCGAATCTGCTGGCACTGCCACAAACAAGAAATTTTGATAATTGGTATGGGAAGACATGTTCTAAGAATTGACACCACAAAAGTTGGAAATGGTGAGGCCTTTGTGACAGAGGACACTCTGAGGTGTCCTCTTGACAAGCTCATAGATGGTGTTCAGCTGGTGGGGACTCATGATGGAGAGGTGACTGATTTGTCAATGTGCCAATGGATGAGAAATCGTCTGGTATCTGCATCACATGATGGCACGATAAAGATCTGGGAAGATCGCAAGACACAGCCACTTGCGGTGATGAGACCACATGATGGGCATCCTGTTTTTTCTGCTACATTTTTCACTGCTCCCCACCGACCTGATCATATTGTTCTTATAACTGGTGGACCTCAAAATCGGGAAGTTAAGCTTTGGGTCTCAGCAAGTGAAGAAGGCTGGCTACTTCCAAGTGATGCTGAATCGATTCAatgggcgaggaggagcttaccgagttccgccaagccgagtacttgtgcggcgggactgatgaggaggccaactacgacgttttcgttcccgcccccagcgagcggctatacaaactcaactttaactctccccggGTTGTcgattggatttggttctataagtcaatgttcacccaagtggggggttcgcattcctttttcttctttccaaatggcgctccttaaccgaattttcgtggcgccgtcgcagctgcatccgaacagttgggcttccatccgctgtttcgagatggtgtgtgaatacttagagctgccggtgtccgtcgatgtttttctttatttcttcaacctcacgaatccttccaaagaagggaaagcgaggaaagggttcatgtccttccgatctgcccagggtccgaggatttttggcttgttcgaggactcttaccatgggtttaaggacaagtattttaaggtgcaaccatcctctttttactcttatcaagaatcatcacctccttcttattgttatcaagaaccatcacctcctccttattcatctcaaataccatcatatcttgagcttctcatgaaagaattcttacatgatataaagacgagtgtcaaaaaatgtagagaaacatgtgtagtcgattatcaagtcacaagaagaggagcaagcaaattcctttccaagagatataatacaagatcctatagagaaagtgaggaaatcaatcaaaggagttcatactccagtgaattagagaacttttcttcctcacacatggaagaagaggaaaatacaaaaataaaggaggaagatgcaccaacaaaggaggaagatgcacaaacaaaggaggTTGTaagagatgaaaataattatgggaatctacaccccaatgaagcagagagtgacatagagggtgagtttattgaaccaccaattcaagaagttcttgatgaagggtacactctagccatcacacaacacccacatgttgaaatcaaagaagtgaagataaccaaggaaagcactgaaaaagggattGGACCTCAAAATCGGGAAGTTAAGCTTTGGGTCTCAGCAAGTGAAGAAGGTTGGCTACTTCCAAGTGATGCTGAATCAGATCTTAGTTTAGGGGAATCACTTTCCCAAACTTCTAATGCTGGTGAGGATGGACTGCAAGACTCAACAAAAGATGTGCACGAAAAGATTTCTGACTCATCTGCATCCATGACAGTACCACCTTCACCTGCACCTAACACAAAAGGGAAGAGACAGAAGGGAAAAAATTCTCAAGCATCTGGTCCATCTTCCCCATCTCCAAGTGCATGCAATTCAGTTGATTTGTCAAATGAACTAGGTGGAAGTTCAAACCTCCCATCTGCTGAAAATGCATTTCATCAAATTCTAGCAATGCAAGAATCAATTAATCAGTTATTGACTATGCAAAAAGAGATGCAGAAGCAAATGACAATGATGGTTACAGTTCCAGTTACAAAAGAAGGTAGAAGGCTTGAGGCAGCCCTGGGGAGAACTGTAGAAAATGCTGTCAAGGCCAATACGGATGCTTTGTGGGCTCGAATTCAAATGGAGAATGTAAAAAATGAAAAGTTGCTACGAGATCGTATTCAGCATGTTACAGGTTTGATTAGTAACTTCATGAATAAGGATCTACCAGCAATATTGGAGAAAATACTAAAGAAGGAAATAGCTTCAGTGGGTCCAGCTGCAGTCCGTGCAATGACCCCCACTATTGAGAAAATAATATCTTCAGCCATTGTAGAGTCTTTCCAGAGAGGAGTAGGTGATAAGGCAGTAAATCAACTTGATAAATCAGTCAATGCAAAACTTGAAGCCACTGTTGCCAGGCAAATTCAAGCACAGTTTCAGACGACTGGAAAACAAGTGCTTCAGGATGCACTCAAATCCAGTTTTGAAATATCAGTGGTTCCCGCATTTGAGAAATCATGCAAAGCAATGTTTGACCAAGTTGATTCTACATTTCAAAAGGGCATGGTTGAACATTCAACTGCAGTGCAACAACGCCTTGAATCTGGGCATACTTCACTGGCAATGACTCTAAGGGAATCCATTAATTCAGCTTCATCAGTTACTCAAACTTTGAGTAGAGAAGTGCTAGAGGGACAGAGAAAGCTAATGGCATATGCAACTGCAGGAGCTAACTCTGGCACACTAAATCCTTTGCCCATTCAGCTGAACAATGGACCTCTGCTTCGTGAAAAGGTTGAAGTGCCTCTCGATCCCAAACAAGAGCTAGCAAGGTTGATAGCTGAACGGAAGTTTGAGGAAGCTTTCACCGGGGCTCTACAAAGAAGTGATGTGTCGATTGTATCTTGGTTATGTTCTCAGGTTGATTTACATGGACTTTTGTCAATGGTTCCTCTTCCTTTGACCCAAGGAGTAGTGCTTTCACTTCTGCAGCAACTGGCATGTGATATTAACAATGATACCTCACGAAAGATTGCATGGATGATGGATGTGGCTGCCGCCATTAATCCCTCAGACCCCATGATTGCGATGCATGTGCGACCCATATTTGAAGTTTATCAGATACTGAATCATCAACGTAGCTTGCCTACAATGACTGGACCTGATCTTTCAAGCATCCTTCTTTTATTGCATGTCATCAACTCTATGCTCATGACATGTAAATGA 3738 0.3232 MALLTNHDQQQLQPPPQLPQQSSQPLSAAASAPISSMGMLSAANAAAAALNRVASSKVPRGRRLAGDHVVYDVDVRLPGEVQPQLEVAPITKYGSDPNLVLGRQIAVNKSYICYGLKQGNIRVLNIHTAVRSLLKGHNQRVTDLAFFAEDVHLLASVGTDGRVFVWKISEGPDDEDKPQITANIVIAIQMVGEEKVENPRICWHCHKQEILIIGMGRHVLRIDTTKVGNGEAFVTEDTLRCPLDKLIDGVQLVGTHDGEVTDLSMCQWMRNRLVSASHDGTIKIWEDRKTQPLAVMRPHDGHPVFSATFFTAPHRPDHIVLITGGPQNREVKLWVSASEEGWLLPSDAESIQWARRSLPSSAKPSTCAAGLMRRPTTTFSFPPPASGYTNSTLTLPGLSIGFGSISQCSPKWGVRIPFSSFQMALLNRIFVAPSQLHPNSWASIRCFEMVCEYLELPVSVDVFLYFFNLTNPSKEGKARKGFMSFRSAQGPRIFGLFEDSYHGFKDKYFKVQPSSFYSYQESSPPSYCYQEPSPPPYSSQIPSYLELLMKEFLHDIKTSVKKCRETCVVDYQVTRRGASKFLSKRYNTRSYRESEEINQRSSYSSELENFSSSHMEEEENTKIKEEDAPTKEEDAQTKEVVRDENNYGNLHPNEAESDIEGEFIEPPIQEVLDEGYTLAITQHPHVEIKEVKITKESTEKGIGPQNREVKLWVSASEEGWLLPSDAESDLSLGESLSQTSNAGEDGLQDSTKDVHEKISDSSASMTVPPSPAPNTKGKRQKGKNSQASGPSSPSPSACNSVDLSNELGGSSNLPSAENAFHQILAMQESINQLLTMQKEMQKQMTMMVTVPVTKEGRRLEAALGRTVENAVKANTDALWARIQMENVKNEKLLRDRIQHVTGLISNFMNKDLPAILEKILKKEIASVGPAAVRAMTPTIEKIISSAIVESFQRGVGDKAVNQLDKSVNAKLEATVARQIQAQFQTTGKQVLQDALKSSFEISVVPAFEKSCKAMFDQVDSTFQKGMVEHSTAVQQRLESGHTSLAMTLRESINSASSVTQTLSREVLEGQRKLMAYATAGANSGTLNPLPIQLNNGPLLREKVEVPLDPKQELARLIAERKFEEAFTGALQRSDVSIVSWLCSQVDLHGLLSMVPLPLTQGVVLSLLQQLACDINNDTSRKIAWMMDVAAAINPSDPMIAMHVRPIFEVYQILNHQRSLPTMTGPDLSSILLLLHVINSMLMTCK 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00488 1245 MobiDBLite consensus disorder prediction 731 813 - -
Aip01g00488 1245 MobiDBLite consensus disorder prediction 760 813 - -
Aip01g00488 1245 MobiDBLite consensus disorder prediction 731 747 - -
Aip01g00488 1245 Pfam WD domain, G-beta repeat 255 285 IPR001680 GO:0005515
Aip01g00488 1245 ProSiteProfiles Trp-Asp (WD) repeats profile. 134 176 IPR001680 GO:0005515
Aip01g00488 1245 Gene3D - 1158 1244 IPR044938 -
Aip01g00488 1245 MobiDBLite consensus disorder prediction 611 641 - -
Aip01g00488 1245 SMART WD40_4 249 286 IPR001680 GO:0005515
Aip01g00488 1245 SMART WD40_4 127 167 IPR001680 GO:0005515
Aip01g00488 1245 PANTHER ENHANCER OF MRNA-DECAPPING-LIKE PROTEIN 731 1245 - -
Aip01g00488 1245 SUPERFAMILY WD40 repeat-like 104 334 IPR036322 GO:0005515
Aip01g00488 1245 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 295 IPR001680 GO:0005515
Aip01g00488 1245 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 14 354 IPR045152 GO:0031087
Aip01g00488 1245 PANTHER ENHANCER OF MRNA-DECAPPING-LIKE PROTEIN 14 354 - -
Aip01g00488 1245 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 86 204 IPR032401 -
Aip01g00488 1245 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 731 1245 IPR045152 GO:0031087
Aip01g00488 1245 Pfam Putative gypsy type transposon 412 469 - -
Aip01g00488 1245 PANTHER ENHANCER OF MRNA-DECAPPING-LIKE PROTEIN 703 728 - -
Aip01g00488 1245 Gene3D - 66 363 IPR015943 GO:0005515
Aip01g00488 1245 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 134 171 - -
Aip01g00488 1245 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 703 728 IPR045152 GO:0031087
Aip01g00488 1245 MobiDBLite consensus disorder prediction 1 29 - -
Aip01g00488 1245 MobiDBLite consensus disorder prediction 592 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00488 Aip-Chr1 6595108 6655113 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00488 K12616 - gmx:100798228 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00488 01 6595108 6655113 Aip01g00488 01 6595108 6655113 ECH