Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00163 ATGGATATCTCAGATGCTGTCATTGTCAAATCTAGTAGGCTGAAATCTGTTGTATGGAATGATTTTGATAGGATAAAAAAAGGAGATACCTGTGTGGCTATCTGTAGGCATTGTAAAAAGAAATTGAGCGGGTCAAGTTCCAGTGGGACATCACATCTAAGGAACCATTTGATCAGGTGTCAGAGAAGATCTAATCATGGCGTAGCACAATTCATTACTTCAAGAGAGAAGAGAAAGGAAGGGACTCTTGCAATTGCAAATTTCAATTTGGGTCAAGATCAGAACAGAGATGAAACCCTTAGCCTTGTGAATATTAAATTTGAGCAGACACAGTTGAAAGATGAATCTGTCAATGCTGGAACTAGTACCTTTGATCAAAGACGGAGTAGATTTGATCTTGCTCGCATGATCATCCTACATGGGTATCCATTGGATATGGTGGAGCACGTTGGTTTCAGAGTTTTTGTAAAGAATCTACAGCCGTTGTTTGAGCTTGTGACATTGAATAGGGTTGAGGCTGATTGTATTGAGATATATGAGAAAGAGAGAAAAAAGATGAGTGAGATGTTAGACAAACTACCTGGGAAAATCAGCCTTAGCGTCGATGAGTGGACTGCTGGCGGTAATGCTGAGTATTTGTGTTTGACAGCGAATTACATTGATGAATCATGGCAGTTAAGAAAGAAGATATTAAATTTTATAAGGGTTGATCGTTTTCACACTGAAGACATGCTTTCAGAAGCTGTCATGACTTGTCTGATGGATTGGGATATTGACCGCAAGTTGTTCTCCTTGATACTGGATAGTTGTTCTACTTCTGATAACATTGCGATTAGAATCAGTGAGAGGCTTTCACAAAACAGGTTTCTTTACTGTAATGGGCAACTATTTGATATACGCTGTGTTATAAATGTTCTTAATATCATGGCTCAACATGCTTTGGGAGCTGTGAGTGAAATAGCGGAAAAGATTCGAGAAATTGTTCGCTATACTAAAAGTTCACAAACTGTGCAGGCAAAGTTTAACGAGATGGCTAAAGAAGTTGGGATCCTGAGTCAAAAGTGCTTGTTTCTAGATAATCCCTTGCAATGGAATACGACTTATTCAATGCTTGAAGCTGCCTTAGAATTCAAGGATGTTTTCATTCTTCTGCAAGAAAATGACACATCCTACAGAATCTGTTTATCTGATGTAGAGTGGGAGAGGATCAGCACAGTTAATAGCTACTTGAAGCTTTTTGTTGATGTCATTGAAATTTTCACTAGGAGCAAGTTTCCAACAGCGAATATATATTTTCCTGAACTCTGTGATGTTAAGTTGAATTTGAATGAATGGTGCAAGAACTCGGATGAATATATCAGTTCTTTGGCATTGAGACTGAGAAGCAAGTTTGATGAATATTGGGAGAAATGTAGCTTGGGGTTGGCAGTAGCAGCCATGTTAGACCCTAGATTTAAGATGAAGTTGTTAGATTATTACTACCCACAAATCTATGGTAGCATGTCTCCCGGTCGCATCGAAGAGGTCTTTGAGGGTGTGAAGGCTCTATACGATGAACATTCAATAGGCTCCCCATTAGCTTCTCATGATCAAGGTTTGGCCTGGCAGGTTGGCAGTGGGACACTTTGCTTACCAAGTTCCACTAAGGACTCCCGGGATAGACTGATGGGGTTCGACAAATTTCTCCATGAAACTTCTCAGGGCGAAGATGGATTGAGGTGGGAGTTTTATGCATTGGAGTATTGGACTGCCTTTTGTTGA 1761 0.3986 MDISDAVIVKSSRLKSVVWNDFDRIKKGDTCVAICRHCKKKLSGSSSSGTSHLRNHLIRCQRRSNHGVAQFITSREKRKEGTLAIANFNLGQDQNRDETLSLVNIKFEQTQLKDESVNAGTSTFDQRRSRFDLARMIILHGYPLDMVEHVGFRVFVKNLQPLFELVTLNRVEADCIEIYEKERKKMSEMLDKLPGKISLSVDEWTAGGNAEYLCLTANYIDESWQLRKKILNFIRVDRFHTEDMLSEAVMTCLMDWDIDRKLFSLILDSCSTSDNIAIRISERLSQNRFLYCNGQLFDIRCVINVLNIMAQHALGAVSEIAEKIREIVRYTKSSQTVQAKFNEMAKEVGILSQKCLFLDNPLQWNTTYSMLEAALEFKDVFILLQENDTSYRICLSDVEWERISTVNSYLKLFVDVIEIFTRSKFPTANIYFPELCDVKLNLNEWCKNSDEYISSLALRLRSKFDEYWEKCSLGLAVAAMLDPRFKMKLLDYYYPQIYGSMSPGRIEEVFEGVKALYDEHSIGSPLASHDQGLAWQVGSGTLCLPSSTKDSRDRLMGFDKFLHETSQGEDGLRWEFYALEYWTAFC 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00163 586 PANTHER BED FINGER-RELATED 2 570 IPR045259 -
Aip01g00163 586 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE 2 570 - -
Aip01g00163 586 Pfam Domain of unknown function (DUF4413) 422 520 IPR025525 GO:0003677
Aip01g00163 586 ProSiteProfiles Zinc finger BED-type profile. 13 66 IPR003656 GO:0003677
Aip01g00163 586 SUPERFAMILY Ribonuclease H-like 184 522 IPR012337 -
Aip01g00163 586 Pfam BED zinc finger 16 66 IPR003656 GO:0003677
Aip01g00163 586 SUPERFAMILY beta-beta-alpha zinc fingers 16 62 IPR036236 -
Aip01g00163 586 SMART bed5 13 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00163 Aip-Chr1 1646167 1648604 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00163 - - gmx:106799808 969.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00163 01 1646167 1648604 Aip01g00163 01 1646167 1648604 ECH