Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2805 ATGAGTCATGAGTGTGCACTCGGTTTGCAAACAATGGCTGAACCTTCCAAGGTCATCCATGTACGAAACGTGGGGCATGAGATATCCGAAAATGATTTGCTTCAGCTCTTTCAGCCTTTTGGAGTCATAACAAAGCTTGTGATGTTGCGTGCAAAAAATCAGGCTCTTGTCCAAATGCAAGATGTTGCTTCAGCCGTTAATTCTTTACAATTTTATGCAAATGTTCAGCCAAGCATAAGGGGGAGGAATGTTTATGTCCAGTTTTCCTCACATCAAGAACTAACATCAATGGATCAAAATCAAGGGCGTGGAGATGAGCCAAATCGAATTCTCTTAGTTACAATTCACCACATGATGTATCCTATAACAGTGGATGTGCTATATCAAGTATTTTCTCCCCATGGATCTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGTTTTCAGGCTCTTATCCAGTATCAGTCACGTCAGCATGCTGTTGTCGCAAGAAGTACACTTCAGGGACGCAATATTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAACTACAAGTGAACTACAACAATGACCGTTCAAGGGACTTTACGAACCCAAATCTTCCTACAGAGCAGAAAGGCAGACCGTCACAACCTGGATATGGCGATACAGTTGGATATCCTCAGATGGCCAATGCTGCAGCCATTGCAGCTGCCTTCGGGGGTGGTTTGCCTCCTGGAGTAACCGGGACAAATGACCGATGTACAATTCTTGTCTCAAATCTTAATCCTGACAGAATAGATGAGGATAAGCTGTTCAACTTGTTCTCCATTTATGGGAACATTGTGAGGATTAAGCTTCTCCGGAATAAACCAGATCATGCACTTATCCAGATGGGGGATGGTTTCCAAGCTGAATTGGCAGTGCACTTTCTGAAGGGAGCCACGTTGTTTGGGAAGCGATTAGAAGTCAACTTCTCGAAACATCCTAACATAACCCCAGGTGCTGACACGCATGAGTATGCCAATTCAAACCTCAACCGTTTCAACCGTAATGCTGCTAAGAACTACCGTTATTGTTGCTCCCCGACAAAGATTATCCATTTGTCAACACTCCCGCAAGATGTCACCGAAGACGAGATTCTGAACCTCCTGGAGGAGCATGGAACTATTGTGAACAGCAAAGTCTTTGAGATGAATGGGAAAAAGCAGGCTCTGGTTCAGTTCGAGACTGAGGAACTGGCTACCGATGCTCTTGTATGCAAGCATGCAAGCTCACTTTCTGGTTCAGTAATCCGCATCTCATTCTCACAGCTGCAGAATATATGA 1326 0.4412 MSHECALGLQTMAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALVQMQDVASAVNSLQFYANVQPSIRGRNVYVQFSSHQELTSMDQNQGRGDEPNRILLVTIHHMMYPITVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQHAVVARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDTVGYPQMANAAAIAAAFGGGLPPGVTGTNDRCTILVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGATLFGKRLEVNFSKHPNITPGADTHEYANSNLNRFNRNAAKNYRYCCSPTKIIHLSTLPQDVTEDEILNLLEEHGTIVNSKVFEMNGKKQALVQFETEELATDALVCKHASSLSGSVIRISFSQLQNI* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2805 441 Pfam RRM-like domain 106 185 IPR021790 -
Ahy9g2805 441 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 12 440 - -
Ahy9g2805 441 MobiDBLite consensus disorder prediction 197 223 - -
Ahy9g2805 441 MobiDBLite consensus disorder prediction 197 213 - -
Ahy9g2805 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 91 IPR000504 GO:0003723
Ahy9g2805 441 SUPERFAMILY RNA-binding domain, RBD 107 208 IPR035979 GO:0003676
Ahy9g2805 441 CDD RRM4_PTBPH3 357 435 - -
Ahy9g2805 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 328 IPR000504 GO:0003723
Ahy9g2805 441 SUPERFAMILY RNA-binding domain, RBD 252 437 IPR035979 GO:0003676
Ahy9g2805 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237 340 - -
Ahy9g2805 441 Gene3D - 251 347 IPR012677 -
Ahy9g2805 441 SMART rrm1_1 365 434 IPR000504 GO:0003723
Ahy9g2805 441 SMART rrm1_1 18 87 IPR000504 GO:0003723
Ahy9g2805 441 SMART rrm1_1 112 181 IPR000504 GO:0003723
Ahy9g2805 441 SMART rrm1_1 255 324 IPR000504 GO:0003723
Ahy9g2805 441 SUPERFAMILY RNA-binding domain, RBD 12 103 IPR035979 GO:0003676
Ahy9g2805 441 Gene3D - 348 441 IPR012677 -
Ahy9g2805 441 Gene3D - 9 106 IPR012677 -
Ahy9g2805 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 364 438 IPR000504 GO:0003723
Ahy9g2805 441 CDD RRM3_PTBPH3 253 328 IPR034797 -
Ahy9g2805 441 Gene3D - 107 212 IPR012677 -
Ahy9g2805 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 69 IPR000504 GO:0003723
Ahy9g2805 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 369 431 IPR000504 GO:0003723
Ahy9g2805 441 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 12 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2805 Ahy-Chr9 117099870 117105270 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2805 K14948 - gmx:100819672 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2791 19 149800068 149805545 Ahy9g2805 9 117099870 117105270 hybridization