Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g0566 ATGGAAGCGCTTAAACTGTGGAACCTAACAAGCCAACCACTCAAGAGGCACTTACTTCACTCAACTACTTCAATCACCTCTTACGCATTTCGTCGAACACCTCGTACCCTCCTTCTCCGCTCCTCCTCTTCTTCTTCTTCAACCGCCTCTTCCTCCGCCCCCGACATCGACAAACCCACCGGAGCTGCTTCCAGGGCTGCTGGACGCAACCGCCGTGCCCCGGCGTCTCCGACCACTTCGACTTCCGATAGGGAGGCTGTTCGAGCCATTCGCTTGAAGAAGGTTGAAGAACTGAGAAGTAAAGGGCTTGATCCATATGCTTATGGATGGGAGAAAACTCACAGTGCTAATCAGCTGCAAGATATATATAGAGATCTGGGAAATGGTGAGGAAGCAAACGGTGAGAATGACCATGTATCAATTGCAGGAAGAATTGTTGCTAGAAGAGCATTTGGCAAGCTTGCTTTTTTGACACTAAGAGATGATTCTGGGACAATTCAGCTCTATTGTGATAAGGAGAGACTCATAGATGACCAGTTTGAACAGTTGAAAGCTCATGTTGATATTGGTGATATACTAGGTGCAAGAGGTTCAATAAAACGCACAGAGAAAGGAGAACTTTCTGTGTGTGTCCTTTCCTTTGCAATCCTTACAAAATCTCTGCTTCCACTACCTGACAAATATCATGGCTTAACTGATATCGATAAACGCTATCGCCAAAGATACGTAGATATGATTGCAAATCCAGAGGTAGCAGATGTTTTCCGCAAAAGAGCAAAGGTTGTATCAGAGATACGGAGAACAATGGATTCTTTAGGTTACATTGAAGTTGAAACCCCAGTTTTGCAGGGAGCAGCTGGGGGAGCCGAAGCCAGACCATTTATTACACATCATAATTCTCTTGGAAGGGACTTATATTTGAGAATTGCAACTGAATTACATCTGAAGAGAATGCTGGTTGGTGGATTTGAAAAGGTATATGAGATTGGGCGAATATTTAGAAATGAAGGAATTTCAACTCGTCATAATCCTGAATTTACCACAATAGAGATGTATGAAGCATACTCAGACTACCAAAGCATGATGAATTTGGCAGAGGAGATTGTGACTCAATGTGCCCTAGCAGTTCTTGGGAAACTTACCCTAGATTATCAGGGAGTTGAGATATGTCTGGAGAGACCTTGGAGGAGGGAGACCATGCACAACCTTGTTAAAGAAGTTTCCGGCATTGATTTTAGTGAATTGGGAGATGATCTTGAAGTTGCAAAGAAAGTTACTCTTAGTACCCTTGGAAACAATCTTGATGCCAAGGACAAAGCTTCGATTGAAGCTTGCCAATCTGTTGGCCATCTACTTAATGAGGTCTTTGAGGTTGTTGTAGAACCAAAGCTCATCCAACCTACATTTGTTTTAGACTATCCAATTGAAATATCTCCACTGGCCAAACCACACCGAAGATCCATAGGTTTGACTGAGAGATTTGAGCTATTCATTTGTGGCCGTGAGCTAGGCAATGCATTCTCGGAACTGACTGATCCTATAGATCAGGGACTTGGAATTGACAGGATCGTGATGCTTTTGACAAATTCTCCCAGCATTCGAGATGTAATAGCCTTTCCAGTATTGAAAGTCCAGCAATAG 1641 0.4339 MEALKLWNLTSQPLKRHLLHSTTSITSYAFRRTPRTLLLRSSSSSSSTASSSAPDIDKPTGAASRAAGRNRRAPASPTTSTSDREAVRAIRLKKVEELRSKGLDPYAYGWEKTHSANQLQDIYRDLGNGEEANGENDHVSIAGRIVARRAFGKLAFLTLRDDSGTIQLYCDKERLIDDQFEQLKAHVDIGDILGARGSIKRTEKGELSVCVLSFAILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADVFRKRAKVVSEIRRTMDSLGYIEVETPVLQGAAGGAEARPFITHHNSLGRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMNLAEEIVTQCALAVLGKLTLDYQGVEICLERPWRRETMHNLVKEVSGIDFSELGDDLEVAKKVTLSTLGNNLDAKDKASIEACQSVGHLLNEVFEVVVEPKLIQPTFVLDYPIEISPLAKPHRRSIGLTERFELFICGRELGNAFSELTDPIDQGLGIDRIVMLLTNSPSIRDVIAFPVLKVQQ* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g0566 546 Pfam OB-fold nucleic acid binding domain 139 213 IPR004365 GO:0003676
Ahy9g0566 546 Gene3D - 84 225 IPR012340 -
Ahy9g0566 546 CDD LysRS_core 248 543 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Ahy9g0566 546 Hamap Lysine--tRNA ligase [lysS]. 90 545 IPR002313 GO:0004824|GO:0005524|GO:0006430
Ahy9g0566 546 Pfam tRNA synthetases class II (D, K and N) 235 516 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ahy9g0566 546 SUPERFAMILY Class II aaRS and biotin synthetases 233 542 IPR045864 -
Ahy9g0566 546 Gene3D Bira Bifunctional Protein; Domain 2 229 546 IPR045864 -
Ahy9g0566 546 PRINTS Lysyl-tRNA synthetase signature 333 350 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Ahy9g0566 546 PRINTS Lysyl-tRNA synthetase signature 286 302 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Ahy9g0566 546 PRINTS Lysyl-tRNA synthetase signature 466 482 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Ahy9g0566 546 PRINTS Lysyl-tRNA synthetase signature 270 280 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Ahy9g0566 546 PRINTS Lysyl-tRNA synthetase signature 315 328 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Ahy9g0566 546 MobiDBLite consensus disorder prediction 41 86 - -
Ahy9g0566 546 CDD LysRS_N 138 245 IPR044136 GO:0000166
Ahy9g0566 546 PANTHER LYSINE--TRNA LIGASE 70 516 - -
Ahy9g0566 546 PANTHER LYSINE--TRNA LIGASE 517 546 - -
Ahy9g0566 546 TIGRFAM lysS_bact: lysine--tRNA ligase 89 516 IPR002313 GO:0004824|GO:0005524|GO:0006430
Ahy9g0566 546 MobiDBLite consensus disorder prediction 41 57 - -
Ahy9g0566 546 Pfam tRNA synthetases class II (D, K and N) 517 542 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ahy9g0566 546 PANTHER LYSYL-TRNA SYNTHETASE 70 516 - -
Ahy9g0566 546 PANTHER LYSYL-TRNA SYNTHETASE 517 546 - -
Ahy9g0566 546 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 255 540 IPR006195 -
Ahy9g0566 546 SUPERFAMILY Nucleic acid-binding proteins 85 226 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g0566 Ahy-Chr9 7895790 7904028 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g0566 K04567 - gmx:100787720 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g0690 19 9488660 9496556 Ahy9g0566 9 7895790 7904028 hybridization