Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g0439 ATGGCTCACCAACCTTTTGACCCATACTACGCATACCAGCAGCAGGATGAGCGAAGCCACATCAACACGTTGTTTGTGTCGGGCCTCCCAGACGACGTGAAGGCGCGTGAGATTCACAATCTCTTCCGCCGTCGCCCCGGCTTCGACTCCTGCCAGCTTAAGTACACCGGACGCGCCAACCAGGTTGTTGCGTTTGCTACTTTTTTCAATCATCAATCGGCGATGGCAGCATTGCACGCTTTAAATGGCGTGAAATTTGATCCACAAGCTGGTTCTGTTTTGCATATTGAACTTGCTAGGTCAAACTCAAGGAGGAAGCGTAAGCCAGGTAGCGGAGCCTATGTTGTTATAGATAAACGGTCTAAAGGAGAGGCTGATGTGCAAGGGTCATCAAGTGATGATGGTGACAGTGATCCTGATGAACCATCAGGAAGTGGTGGCAGCCATGGTGATTTAGCAACCACTAAAAGTGAGATTAAGTTTGGCTCTGACAGTGCTGTGTCTGCGCATGAAAGGGGTCCTGATGGAGGACCATGCTCTACTCTCTTCATTGCAAATCTTGGTCCAAACTGCACTGAAGATGAACTGAGACAAACTTTCTCAGTGTATGCTGGATTCAACATGGTCAAAATGCGTTCTAGAGGAGGAATGCCGGTTGCATTTGCTGATTTTGATGAAGTTGAACAAGCTACTAAGGTCATGGAGCAGCTTCAGGGCAGCATGCTGTCATCGTCAGATCGGGGTGGCATGCACATAGAATACGCAAGGTCTAAAATGAGGAAGCATTAG 789 0.4842 MAHQPFDPYYAYQQQDERSHINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDPQAGSVLHIELARSNSRRKRKPGSGAYVVIDKRSKGEADVQGSSSDDGDSDPDEPSGSGGSHGDLATTKSEIKFGSDSAVSAHERGPDGGPCSTLFIANLGPNCTEDELRQTFSVYAGFNMVKMRSRGGMPVAFADFDEVEQATKVMEQLQGSMLSSSDRGGMHIEYARSKMRKH* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g0439 262 SUPERFAMILY RNA-binding domain, RBD 22 243 IPR035979 GO:0003676
Ahy9g0439 262 Gene3D - 17 104 IPR012677 -
Ahy9g0439 262 SMART rrm1_1 23 97 IPR000504 GO:0003723
Ahy9g0439 262 SMART rrm1_1 181 253 IPR000504 GO:0003723
Ahy9g0439 262 PANTHER RNA-BINDING PROTEIN-RELATED 8 251 - -
Ahy9g0439 262 MobiDBLite consensus disorder prediction 102 154 - -
Ahy9g0439 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 101 IPR000504 GO:0003723
Ahy9g0439 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 257 IPR000504 GO:0003723
Ahy9g0439 262 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 8 251 - -
Ahy9g0439 262 Gene3D - 175 262 IPR012677 -
Ahy9g0439 262 CDD RRM_scw1_like 178 256 - -
Ahy9g0439 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 87 IPR000504 GO:0003723
Ahy9g0439 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 243 IPR000504 GO:0003723
Ahy9g0439 262 CDD RRM_RBPMS_like 22 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g0439 Ahy-Chr9 5556883 5560293 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g0439 - - gmx:100810989 419.083