Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g0492 ATGTTGTTTGCAAATATGACGTCATCAGTTCTAACTGCCACTGATTTGCGGCGGATATTTGAGAAGCTTGACATGAATTGCGACGGTTTCGTGAGCCTTGAGGAACTCAATTGGCTCCTCCACAACATAGGCTTCCAATTAACGTTAGATGAATTGGAATCCCTTGTTGAGAAGAAAAGCCTTAACTTGAACGAGTTCTTGTTCTTCTATGACTCAATAATATCCAAGAAGAATTGCAATGATGAAGAGATGGATGATGAGTTGTTGGAGAATGATCTTGTGGAAACGTTCAAGGTGTTTGATTTGGATGGAGATGGATTCATAACGAGCAACGAGCTTCAGTGTGTTCTTAAGAGGCTTGGGTTGTGGGATGAGAGAGGTGGCAAGGATTGTGGTTCCATGATTCGATTCTATGATACCAATTCCGATGGCCAGCTTGATTTTGAGGAGTTTAAGAATATGATGTTGCTCACCATCACCACCGCATGA 489 0.4192 MLFANMTSSVLTATDLRRIFEKLDMNCDGFVSLEELNWLLHNIGFQLTLDELESLVEKKSLNLNEFLFFYDSIISKKNCNDEEMDDELLENDLVETFKVFDLDGDGFITSNELQCVLKRLGLWDERGGKDCGSMIRFYDTNSDGQLDFEEFKNMMLLTITTA* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g0492 162 ProSiteProfiles EF-hand calcium-binding domain profile. 126 161 IPR002048 GO:0005509
Ahy8g0492 162 Pfam EF hand 17 36 IPR002048 GO:0005509
Ahy8g0492 162 Gene3D - 12 71 - -
Ahy8g0492 162 ProSitePatterns EF-hand calcium-binding domain. 101 113 IPR018247 -
Ahy8g0492 162 CDD EFh 92 155 IPR002048 GO:0005509
Ahy8g0492 162 ProSiteProfiles EF-hand calcium-binding domain profile. 11 46 IPR002048 GO:0005509
Ahy8g0492 162 SUPERFAMILY EF-hand 15 157 IPR011992 -
Ahy8g0492 162 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 9 158 - -
Ahy8g0492 162 ProSitePatterns EF-hand calcium-binding domain. 139 151 IPR018247 -
Ahy8g0492 162 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 9 158 - -
Ahy8g0492 162 Gene3D - 72 156 - -
Ahy8g0492 162 SMART efh_1 15 43 IPR002048 GO:0005509
Ahy8g0492 162 SMART efh_1 130 158 IPR002048 GO:0005509
Ahy8g0492 162 SMART efh_1 92 120 IPR002048 GO:0005509
Ahy8g0492 162 ProSitePatterns EF-hand calcium-binding domain. 24 36 IPR018247 -
Ahy8g0492 162 Pfam EF-hand domain pair 91 155 IPR002048 GO:0005509
Ahy8g0492 162 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g0492 Ahy-Chr8 9930747 9931584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g0492 6 156 EF-hand Containing Proteins AT1G21550 49.057 1.57e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g0492 K13448 - gmx:100527117 188.348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2750 17 125894809 125895677 Ahy8g0492 8 9930747 9931584 hybridization