Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy7g0122 ATGGCGCAAGTGCTGTACCTGCGTTTGTGTCTCCCTGCAGAACCCCGAAAATTCTCACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAAACCTTCACTGAAGCTTCCACAAAGAACTCGAAGCTCCAACGTATCAATTCCTGCCACCACCAAAGGTGGTTCCAGTCGCTTGCTCAAAACCCAGAAGCTGAATTCAGAGGTTTCTCCTCACAGAGCTGTCTCAGCTGTGAGATTGATGAGGATAGAGCTTGGTGGTGCTTTTGCTGACCTTCTCAATGAGAAAGGCAAAGGTTCTGGCGAGAATGAGATGGGATATGTCCAGAGAACGCTCGGCTTTCGAACCCGGGAATTGAATCATCATGATCTTAGATTGGTTACTGACATTGTTGGCGGCACAATTCGTTGGAGAAGATATCTTGATCATCTGATCAGTTCACTTTGTCATGATAAAGATATATCTAGTATGGAACCTCTTCTCTTACAGATTCTAAGGATAGGATTCTATGAGATTGTCAAATTAGATATGCCACCATATGCTGTTGTAGATGAGAATGTTAGGCTTGCCAAAGTTGCGCTTAGACCTGGTGCCGGCAACATGGTCAACGGAATCCTCCGAAAGCTAGTTGCACTCAAGGAAGATGAGGTTCTTCCTTTGCCCAGAGTGGAGGGTGATGATCGTGCCCAAGCCCGTGCTCTAGCAACTCTATACTCACACCCAGTTTGGATGGTAAGGAGATGGACAAAGTATCTTGGCCAGGAAGAAACCATTAAATTGATGAAATGGAACAACAGTGAACCTAGTTTCAGCTTAAGAGCAAACCAGGCAAGAGGTTTTTCGAGAGATGACCTTGTGATGCAGCTTAATGCATTGAAGGTCCCATACAGTGTTTCACCACATTTGGATGAATTTGTTCGCGTCAAAACCGGATTGCAGACTGTAATTCATGCCGGATTACTCAGAAAAGGCTTATGTTCAGTTCAAGATGAAAGTGCAGGTCTGGTAGTCTCTATTGTGGATCCTCAACCGGGTGAAACTGTGATTGATTGCTGTGCTGCTCCTGGTGGAAAGACCTTATACATGGCCTCTCGTTTATGTGGCCAAGGTTTGGTATTTGCAGTTGATGTAAATCGCGGCAGATTGAGGATTCTCAAAGAGACAGCAAAGTTGCACCAATTAGACGGCGTTGTTACCACCGTCCACGCCGATCTTCGCGTGTTAACGGATGGTGAAGCGCTAAAGAGTAACAAAGTTTTGTTGGATGCTCCATGCTCTGGGCTTGGTGTTCTTTCGAAGAGAGCGGATTTGCGATGGAACCGGAAGCTGGAAGATATGGAAGACCTGAAGAAATTACAGGACGAGCTCCTCGACGCAGCGGCCAAATTGGTAAAACCTGGTGGAGTGTTAGTTTATAGTACATGCTCCATAGATCCTGAAGAGAATGAGGAGAGGGTAGCAGCATTTCTTCTAAGACATGCGGAATTTCGCATTGATCCTGTAGACAGATTTGTTCCACCTGATTTTGTGACGGATGGTGGTTTCTATTTTTCTAACCCGGTAAAGCATTCGCTCGATGGCTCCTTTGCGGCTCGATTGGTGCGTGCTTCCTAA 1614 0.4572 MAQVLYLRLCLPAEPRKFSPSSSSSSSSSSSKPSLKLPQRTRSSNVSIPATTKGGSSRLLKTQKLNSEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNHHDLRLVTDIVGGTIRWRRYLDHLISSLCHDKDISSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNMVNGILRKLVALKEDEVLPLPRVEGDDRAQARALATLYSHPVWMVRRWTKYLGQEETIKLMKWNNSEPSFSLRANQARGFSRDDLVMQLNALKVPYSVSPHLDEFVRVKTGLQTVIHAGLLRKGLCSVQDESAGLVVSIVDPQPGETVIDCCAAPGGKTLYMASRLCGQGLVFAVDVNRGRLRILKETAKLHQLDGVVTTVHADLRVLTDGEALKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDMEDLKKLQDELLDAAAKLVKPGGVLVYSTCSIDPEENEERVAAFLLRHAEFRIDPVDRFVPPDFVTDGGFYFSNPVKHSLDGSFAARLVRAS* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy7g0122 537 MobiDBLite consensus disorder prediction 17 56 - -
Ahy7g0122 537 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 260 536 IPR001678 GO:0008168
Ahy7g0122 537 PRINTS RNA (C5-cytosine) methyltransferase signature 320 334 IPR023267 GO:0001510
Ahy7g0122 537 PRINTS RNA (C5-cytosine) methyltransferase signature 349 359 IPR023267 GO:0001510
Ahy7g0122 537 PRINTS RNA (C5-cytosine) methyltransferase signature 467 483 IPR023267 GO:0001510
Ahy7g0122 537 PRINTS RNA (C5-cytosine) methyltransferase signature 417 429 IPR023267 GO:0001510
Ahy7g0122 537 PRINTS RNA (C5-cytosine) methyltransferase signature 518 535 IPR023267 GO:0001510
Ahy7g0122 537 Gene3D Vaccinia Virus protein VP39 334 537 IPR029063 -
Ahy7g0122 537 Pfam NusB family 104 210 IPR006027 GO:0003723|GO:0006355
Ahy7g0122 537 Gene3D Sun protein; domain 3 227 333 - -
Ahy7g0122 537 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 30 536 - -
Ahy7g0122 537 Pfam 16S rRNA methyltransferase RsmB/F 339 533 IPR001678 GO:0008168
Ahy7g0122 537 TIGRFAM rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 114 535 IPR004573 GO:0006364|GO:0008649
Ahy7g0122 537 Gene3D - 88 220 IPR035926 -
Ahy7g0122 537 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 232 535 IPR029063 -
Ahy7g0122 537 MobiDBLite consensus disorder prediction 16 56 - -
Ahy7g0122 537 CDD AdoMet_MTases 347 473 - -
Ahy7g0122 537 PRINTS Viridiplantae FMU-related RCMT signature 102 118 IPR023268 -
Ahy7g0122 537 PRINTS Viridiplantae FMU-related RCMT signature 217 230 IPR023268 -
Ahy7g0122 537 PRINTS Viridiplantae FMU-related RCMT signature 78 101 IPR023268 -
Ahy7g0122 537 PRINTS Viridiplantae FMU-related RCMT signature 494 506 IPR023268 -
Ahy7g0122 537 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 30 536 IPR023267 GO:0001510
Ahy7g0122 537 SUPERFAMILY NusB-like 109 244 IPR035926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy7g0122 Ahy-Chr7 864092 870050 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy7g0122 K03500 - gmx:100779327 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0226 17 2185954 2191950 Ahy7g0122 7 864092 870050 hybridization