LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy6g2157	ATGGGAGTGACCCCAAATATCGCTCCTTCGATGTTATCTGCTGATTTCGCTAATTTGTCGTCGGAGGCTCACCGCATTCTCAATTCCGGCGCCGATTGGCTCCACATGGATGTCATGGATGGGCACTTTGTCCCCAATTTAACCATTGGTGCTCCAGTCATTGAAAGTTTGAGAAAGCATACAACGGCATATCTGGACTGTCACATGATGGTTACAAATCCTCTAGATTATGTTGAACCTTTGGGGAAAGCCGGTGCTTCTGGTTTTACATTTCATGTCGAGACATCTAAAGATAACTGGCAAGAACTTATTCAAATGATAAAGTCACACGGCATGAGACCTGGTGTAGCATTGAATCCAGGGACACCCATTGGCGAGGTTTATCCTCTGGTTGAGGCTGAAAAACCAGTGGAAATGGTTCTTGTGATGACTGTAGAGCCTGGATTTGGTGGACAAAAATTTATGCCGGAGATGATGGATAAGGTACGCATACTGAGAAAGAGGTATCCATTGCTTGACATAGAGGTTGATGGTGGTTTAGGACCTTCAAACATAGACATGGCGGCATCCGCAGGTGCAAACTGCATTGTTGCAGGAAGTTCAGTTTTTGGAGCCTCTGAGCCAGCTGAAGTAATATCCTTGCTAAGGAGTTCTGTTCAGAAAGCCTAG	669	0.4544	MGVTPNIAPSMLSADFANLSSEAHRILNSGADWLHMDVMDGHFVPNLTIGAPVIESLRKHTTAYLDCHMMVTNPLDYVEPLGKAGASGFTFHVETSKDNWQELIQMIKSHGMRPGVALNPGTPIGEVYPLVEAEKPVEMVLVMTVEPGFGGQKFMPEMMDKVRILRKRYPLLDIEVDGGLGPSNIDMAASAGANCIVAGSSVFGASEPAEVISLLRSSVQKA*	223

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy6g2157	222	Gene3D	Aldolase class I	2	222	IPR013785	-
	Ahy6g2157	222	Pfam	Ribulose-phosphate 3 epimerase family	7	203	IPR000056	GO:0005975\|GO:0016857
	Ahy6g2157	222	ProSitePatterns	Ribulose-phosphate 3-epimerase family signature 1.	34	48	IPR000056	GO:0005975\|GO:0016857
	Ahy6g2157	222	ProSitePatterns	Ribulose-phosphate 3-epimerase family signature 2.	140	162	IPR000056	GO:0005975\|GO:0016857
	Ahy6g2157	222	TIGRFAM	rpe: ribulose-phosphate 3-epimerase	7	216	IPR026019	GO:0004750\|GO:0006098
	Ahy6g2157	222	PANTHER	RIBULOSE-5-PHOSPHATE-3-EPIMERASE	1	221	IPR000056	GO:0005975\|GO:0016857
	Ahy6g2157	222	Hamap	Ribulose-phosphate 3-epimerase [rpe].	4	218	IPR026019	GO:0004750\|GO:0006098
	Ahy6g2157	222	SUPERFAMILY	Ribulose-phoshate binding barrel	5	221	IPR011060	-
	Ahy6g2157	222	PIRSF	RPE	1	222	IPR026019	GO:0004750\|GO:0006098
	Ahy6g2157	222	PANTHER	RIBULOSE-PHOSPHATE 3-EPIMERASE	1	221	-	-
	Ahy6g2157	222	CDD	RPE	7	216	IPR000056	GO:0005975\|GO:0016857

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy6g2157	Ahy-Chr6	103132564	103136987	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy6g2157	K01783		-	gmx:100527490	399.053

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy16g2511	16	134694600	134698877	Ahy6g2157	6	103132564	103136987	hybridization