Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1977 ATGAAGGTAGCATGTTTCTGCACCCCAGATATTAATTATGTTTATTTTGGTACCCAAAGACCAAAATTTGGTTCAAAAGAAGCACTTTTCTATCTCCAAAGGTGCTCAAATTTCAAGCATCTCAGGCAAGTTCATGGAAGAATAATCCGTTATGGCCTCACACATGATCAATTACTCATTAGGAACCTCATTCAAATTTCTTCCTCTTATGGCAAATTGAACTATGCCAAATTGGTTTTTGAGCAACTCAATTCCCCAGATACCTTCACTTGGAATGTGATGATTAGAGCATACACTAGGTTTGGTTCCCCTGAAAAAGCTCTTATTTTGTTCACTATTATGGTGTCAAAGGGCATTGAACTTGACAAGTTCACATACCCTTTTGTGATTAATGCTTGCATTGTTTCTTCAGCAACTGATTTTGGAAAAGTTGTGCAAGCTTTAGCAATCAAAATGGGGTTTTGGAATGACACCTATGTGCAGAACACTATGATGAATCTTTACTTCAAATGTGAGGATGCTGATAATGGACACAAGGTGTTCGATAAAATGCGCGTGCAGGAGGTTGTTTCTTGGACCACGGCGATTGGAGGTCTAGTTGCTTGCGGACGACTCGAGGCTGCTCGGAGATTGTTTGAGGAAATGCCTTCTAAGAATGTTGTTTCGTGGACGGCGATGATTGATGGGTATGTGAGACACCAGCAGCCAATGGAGGCCTTTGACTTGTTTGAAAGAATGCGACTTGATGGTGTGCAGCCCAACGAGTTCACCCTTGTGAGCTTGATCAAGGCTTGTGCTGAAATGGGTAGCCTCAAATTGGGTAAATGGATTCATGATTATGCTTTCAACAATGACTTCAAACTTGATCCTTTCTTGGGTACTGCTCTTATAGACATGTACAGCAAATGTGGCAGTTTAGATGATGCAAGGCAAGTTTTCGATACCATGGAGGCCAAGAACTTAGCCACGTGGAACACAATGATCACTAGCTTGGGTGTGCATGGATTGAGGAATGAAGCATTGGAACTTTTTGAGGAAATGTTGAATAATAAGTCAAATGAAGTTCCTGATGCTATCACATTTGTTGGTGTTCTGAATGCATGCCTTCAATTGAATGATCTTGAACAAGGTCAGAAGTATTTCAATCTCATGACACAACATTATGGTATAACACCTTTGTTGGAGCATTATGCATGCATGGTTCAACTCTATAGAAATGCTAATGTGCTGGATGATATTTACACATTGGATAAGACAATATCAGTGGAGAAAACAAACAACTATGTTGCAGAGTTTCTCCAAGAGAACAAGATCATTGGTGTTGATGACATAGAGGAACTCCTGCAGAAGCATTACAGGTACTTGAATTGCTTAGAAGAACAAGTTGTAGATAATTTCTCCTCAAGTTCTTCACCTTAA 1419 0.3996 MKVACFCTPDINYVYFGTQRPKFGSKEALFYLQRCSNFKHLRQVHGRIIRYGLTHDQLLIRNLIQISSSYGKLNYAKLVFEQLNSPDTFTWNVMIRAYTRFGSPEKALILFTIMVSKGIELDKFTYPFVINACIVSSATDFGKVVQALAIKMGFWNDTYVQNTMMNLYFKCEDADNGHKVFDKMRVQEVVSWTTAIGGLVACGRLEAARRLFEEMPSKNVVSWTAMIDGYVRHQQPMEAFDLFERMRLDGVQPNEFTLVSLIKACAEMGSLKLGKWIHDYAFNNDFKLDPFLGTALIDMYSKCGSLDDARQVFDTMEAKNLATWNTMITSLGVHGLRNEALELFEEMLNNKSNEVPDAITFVGVLNACLQLNDLEQGQKYFNLMTQHYGITPLLEHYACMVQLYRNANVLDDIYTLDKTISVEKTNNYVAEFLQENKIIGVDDIEELLQKHYRYLNCLEEQVVDNFSSSSSP* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1977 472 Pfam PPR repeat family 218 266 IPR002885 -
Ahy6g1977 472 Pfam PPR repeat family 319 368 IPR002885 -
Ahy6g1977 472 Pfam PPR repeat family 86 133 IPR002885 -
Ahy6g1977 472 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 319 IPR002885 -
Ahy6g1977 472 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Ahy6g1977 472 PANTHER BNAA06G32750D PROTEIN 18 430 - -
Ahy6g1977 472 SUPERFAMILY TPR-like 196 349 IPR011990 GO:0005515
Ahy6g1977 472 Coils Coil 441 461 - -
Ahy6g1977 472 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 121 IPR002885 -
Ahy6g1977 472 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 218 IPR002885 -
Ahy6g1977 472 TIGRFAM PPR: pentatricopeptide repeat domain 294 320 IPR002885 -
Ahy6g1977 472 TIGRFAM PPR: pentatricopeptide repeat domain 89 122 IPR002885 -
Ahy6g1977 472 TIGRFAM PPR: pentatricopeptide repeat domain 190 221 IPR002885 -
Ahy6g1977 472 TIGRFAM PPR: pentatricopeptide repeat domain 221 255 IPR002885 -
Ahy6g1977 472 TIGRFAM PPR: pentatricopeptide repeat domain 323 351 IPR002885 -
Ahy6g1977 472 Pfam PPR repeat 162 185 IPR002885 -
Ahy6g1977 472 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Ahy6g1977 472 Gene3D Tetratricopeptide repeat domain 273 446 IPR011990 GO:0005515
Ahy6g1977 472 Gene3D Tetratricopeptide repeat domain 143 272 IPR011990 GO:0005515
Ahy6g1977 472 Gene3D Tetratricopeptide repeat domain 19 142 IPR011990 GO:0005515
Ahy6g1977 472 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 18 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1977 Ahy-Chr6 97229354 97231281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1977 11 420 Glycoside Hydrolase AT3G49170 28.087 9.91e-52 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1977 - - gmx:100789790 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2303 16 127635623 127637597 Ahy6g1977 6 97229354 97231281 hybridization