Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1938 ATGGCTACTCCACTTCAAGACCGAGTCGCAATCATCACCGGCTCCTCCCGTGGAATCGGACGAGAAATCGCTCTCCATCTCGCCTCACTCGGCGCCAGAGTCCTTATCAACTACACCTCCAACTCCTCCCTAGGTGACTCACTCGCTGCACAGATCAACTCCCACGCCGCCGCCGGAGCTGTCCTCCCTCGCGCCATCGCCGTCCGAGGCGACGTCTCGGAACCGAACGACGTGAAGGCGCTGTTCGACTCGGCGGAGCGCGAGTTCGGCTCGGCGGTTCACATCCTGGTTAACGCGGCCGGTGTTCTTGATAGCAAGTACTCGACCATAGCCAACATTGCAGTGGAGGATTTCGATCGCATTTTCAGTGTAAATGCAAGAGGATCATTCCTGTGCTGCAAAGAGGCAGCAAACCGATTGAAACGTGGTGGTGGAGGTCGAATCATAATGCTAAGTTCATCGATGGTGGGTGCACTGAGACCAACTTTTGGGGCATACTCAGCATCCAAAGCAGCTGTTGAGGCCATGATTCATATTCTGGCAAAAGAGCTGAAGGGAACTGGGATTACGGCGAACTGTGTTGCACCTGGGCCAATTGCAACTGAAATGTACTATGCTGGGAAGACCGAAGAGCAAGTGAAAGCGAATATTGCAGAGTCTCCTCTCAGTAGGCTTGGTGAGCCAAAGGATGTAGCTCCTTTGGTGGGATTTTTGGCTACTGATGCTGGTGAATGGGTTAATGGGCAGGTCATTCGGGTTAATGGTGGCTATGTTTAG 777 0.5341 MATPLQDRVAIITGSSRGIGREIALHLASLGARVLINYTSNSSLGDSLAAQINSHAAAGAVLPRAIAVRGDVSEPNDVKALFDSAEREFGSAVHILVNAAGVLDSKYSTIANIAVEDFDRIFSVNARGSFLCCKEAANRLKRGGGGRIIMLSSSMVGALRPTFGAYSASKAAVEAMIHILAKELKGTGITANCVAPGPIATEMYYAGKTEEQVKANIAESPLSRLGEPKDVAPLVGFLATDAGEWVNGQVIRVNGGYV* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1938 258 Pfam Enoyl-(Acyl carrier protein) reductase 14 257 - -
Ahy6g1938 258 PRINTS Glucose/ribitol dehydrogenase family signature 140 156 IPR002347 -
Ahy6g1938 258 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Ahy6g1938 258 PRINTS Glucose/ribitol dehydrogenase family signature 166 185 IPR002347 -
Ahy6g1938 258 PRINTS Glucose/ribitol dehydrogenase family signature 9 26 IPR002347 -
Ahy6g1938 258 PRINTS Glucose/ribitol dehydrogenase family signature 221 241 IPR002347 -
Ahy6g1938 258 PRINTS Glucose/ribitol dehydrogenase family signature 187 204 IPR002347 -
Ahy6g1938 258 Gene3D - 1 257 - -
Ahy6g1938 258 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 2 258 - -
Ahy6g1938 258 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 2 258 - -
Ahy6g1938 258 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 153 181 IPR020904 GO:0016491
Ahy6g1938 258 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Ahy6g1938 258 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 IPR002347 -
Ahy6g1938 258 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 IPR002347 -
Ahy6g1938 258 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 197 - -
Ahy6g1938 258 CDD THN_reductase-like_SDR_c 5 258 - -
Ahy6g1938 258 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 257 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1938 Ahy-Chr6 94725331 94727746 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1938 5 256 Acyl Lipid Metabolism Gene Families AT1G24360 33.465 1.62e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1938 K00059 - pvy:116113569 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2268 16 125473808 125476281 Ahy6g1938 6 94725331 94727746 hybridization