Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1896 ATGCAGACTAGGACGGTTCAAGTGAAGCAACTCTCAGATCTAGCCGGTGAGAGAGAGATTCACGAGTTCTTCTCTTTCTCCGGAGAAATTGAGCACATTGAGATCTTGAGTGAACATGGGAAATCAAAGACTGCATTTGTGACATTTAAAGACCCCAAAGCGCTTGAAATTGCATTATTGTTATCAGGAGCAACAATAGTAGATCAGATTGTGAGTATAACACCAGCTGAGAACTATGTACCGAATTCTGAGTTGCAGGAAGTACAAAAGGTGGAAAATGCTGTAAGTGTAGCATCATCCGGAGATGTTATGCTGAATAGCGAGGAGGGGAAAACCAGCCCCACCAATGGAAGAATGTACCTTAATAGAGCACAGGATGTAGTTACGAATATGCTGGCAAAAGGTTCAGCAATCAGACAAGATGCTGTTAATAAAGCTAAAGCATTTGACGAAAAGCATCAGTTGACTGCTAATGCATCGGCGAAGGTCATTTCCTTTGACAAGAGAGTTGGACTCACAGAAAAGTTGACAGTTGGAATTTCTGCAGTGAATGAGAAAGTGAAGAGCGTGGATCAGAAGCTTCATGTTTCCGATAAAACGATGGCAGCGATATTCGCAGCTGAGAGGAAGTTGAATGATACAGGATCAGCTGTCAAAACTAGCAGGTATGTGACTGCCGGAACGGCATGGTTAAATGGTGCTTTTAGCAAGGTGGCGAAAGCCGGACATGTTGCCAGTACTAAAACAAGAGAAAAGTTTCATTTCGCTGTTTCAAACTTGACTGCTAAGGAACCTTCCGTGGCTGCTTAG 810 0.4321 MQTRTVQVKQLSDLAGEREIHEFFSFSGEIEHIEILSEHGKSKTAFVTFKDPKALEIALLLSGATIVDQIVSITPAENYVPNSELQEVQKVENAVSVASSGDVMLNSEEGKTSPTNGRMYLNRAQDVVTNMLAKGSAIRQDAVNKAKAFDEKHQLTANASAKVISFDKRVGLTEKLTVGISAVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTAWLNGAFSKVAKAGHVASTKTREKFHFAVSNLTAKEPSVAA* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1896 269 SMART rrm1_1 5 74 IPR000504 GO:0003723
Ahy6g1896 269 SUPERFAMILY RNA-binding domain, RBD 2 83 IPR035979 GO:0003676
Ahy6g1896 269 Gene3D - 1 89 IPR012677 -
Ahy6g1896 269 PANTHER RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 269 - -
Ahy6g1896 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Ahy6g1896 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 66 IPR000504 GO:0003723
Ahy6g1896 269 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1896 Ahy-Chr6 92986083 92989703 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1896 - - gmx:100779011 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2221 16 123428222 123431762 Ahy6g1896 6 92986083 92989703 hybridization