Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1373 ATGCCTCGCTATGAAGATAAATACGGCAACACACGCCTCTATGTTGGTCGATTGGCTTCAAGGACGCGTTCCCGTGATCTGGAGCGAGTTTTCAGCCGATATGGAAGAGTTCGAGATGTGGATATGAAGCATGATTACGCCTTTGTTGAATTCAGCGATCCTAGAGATGCTGATGATGCAAGATACAACTTGGATGGCCGTGATGTTGATGGAAGTCGTATTATTGTGGAATTTGCGAAAGGGGTTCCTCGTGGTTCCCGTGAATATTTGGGTCGTGGTCCTCCTCCTGGAACTGGGCGTTGCTTTAACTGTGGTATTGATGGCCATTGGGCCCGAGATTGCAAAGCTGGAGACTGGAAGAACAAGTGTTATCGTTGTGGTGAGAGGGGTCATATAGAAAAAAACTGCAAGAACAGTCCCAAAAAGCTGAGTAGACGTGGGCGTAGTTATTCCCGCTCTCCGGTCAGGTCACGTTCCCCAGTCAGGTCACGCTCTCCTCGTCGTGGCAGAAGCAGGGACAGGAGTTACACCCCAGAACGCAGTTACAGTCGATCAAGATCCCCAGTTAGGGGGGATCGAAGCCCAGTTCGTGATAGATCAGAGAGCCCACGCTCTAGAAGCCCTGAACCCAAAGGTAGCCCTCAGCCCTCGAAGGCAAGGAAGCATAGTCCATCACCTGATGAAGGGAGTCCACAGAAGAGAGGTGATGCATCTCCTGGCAATGAGAGGATGGTTACACAGCAAGATGGATCTGATTACAGTGATGGCCCCAGAGGAAAGAGCAGAAGCCCCACTAGTCCAGCAGGGGATGACAGCCCAAAGGCTAATGGTCGCAGCCGCAGTCCTAGTCCCAGAGATGATGACAGAAGCCCCATTGATGACGAAGAAGACAACCAGCGTAATCTACCAAGAGGCAGTGAGTCCCCTTAA 930 0.5129 MPRYEDKYGNTRLYVGRLASRTRSRDLERVFSRYGRVRDVDMKHDYAFVEFSDPRDADDARYNLDGRDVDGSRIIVEFAKGVPRGSREYLGRGPPPGTGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSRRGRSYSRSPVRSRSPVRSRSPRRGRSRDRSYTPERSYSRSRSPVRGDRSPVRDRSESPRSRSPEPKGSPQPSKARKHSPSPDEGSPQKRGDASPGNERMVTQQDGSDYSDGPRGKSRSPTSPAGDDSPKANGRSRSPSPRDDDRSPIDDEEDNQRNLPRGSESP* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1373 309 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Ahy6g1373 309 Gene3D - 3 89 IPR012677 -
Ahy6g1373 309 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Ahy6g1373 309 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 7 292 - -
Ahy6g1373 309 MobiDBLite consensus disorder prediction 134 309 - -
Ahy6g1373 309 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Ahy6g1373 309 MobiDBLite consensus disorder prediction 241 279 - -
Ahy6g1373 309 MobiDBLite consensus disorder prediction 280 302 - -
Ahy6g1373 309 SUPERFAMILY Retrovirus zinc finger-like domains 91 139 IPR036875 GO:0003676|GO:0008270
Ahy6g1373 309 PANTHER SPLICING FACTOR, PUTATIVE-RELATED 7 292 - -
Ahy6g1373 309 SUPERFAMILY RNA-binding domain, RBD 7 100 IPR035979 GO:0003676
Ahy6g1373 309 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Ahy6g1373 309 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Ahy6g1373 309 Gene3D - 91 119 - -
Ahy6g1373 309 Gene3D - 120 171 - -
Ahy6g1373 309 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Ahy6g1373 309 MobiDBLite consensus disorder prediction 170 206 - -
Ahy6g1373 309 SMART rrm1_1 12 77 IPR000504 GO:0003723
Ahy6g1373 309 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Ahy6g1373 309 Pfam Zinc knuckle 121 138 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1373 Ahy-Chr6 22351442 22354940 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1373 K12896 - gmx:100813237 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1523 16 34655193 34658607 Ahy6g1373 6 22351442 22354940 hybridization