Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1122 ATGGAAGAAGCAGAAGCAGAAGCTGAAGTAGAATCAAACCGAGACAACGTTGAAGTAGCTCCGGCACTAATCGCGGTTCACCCGGAACAAATCTCCGTCGCCGTCGCCGTTGGACCCGACCTCCGTGTCTTCGACCTCCTTGCTGGTTCCGCTGCTTCTCTAGTCGACGAGTGCGGTGCACCCTTCCACAAGGACCCAATCAGAGCTATCAGATTCGGCTCCAGAGGGAAGCTCTTCGTGTCCGCCGGCGACGACAAAACTGTCAAGATTTGGTCCACGGAATCGTGGCGCTGCGTCTGCACGGTGTCGTCGGAGAAGAGGGTGAGTGCGGTTGCGATAAGCGAGGACGGTTGCCACGTGTGTTTCGCGGACAAGTTCGGTGTTGTGTGGGTTGTGGACGTGGCTGGGTCCCATGGACACGTGACATTAGGTGATAGGAAACCGACGCCGCTTCTTTCTCACTATTGCAGTATCATCCCTAGCTTGGAATTTTCCCCTGATGGCAGGTTTATTTTAAGTGCTGATCGGGATTCTAAAATTCGGGTTACTAATTTTCCCAAGAAGCCGTTGAATGGAGCTCACGAGATACAAAGTTTCTGCCTTGGTCATACAGAGTTTGTATCCTGCCTTGCGTTTGTTCATGCTCGGGAATGCCCTCAAGGCCTTCTTGTCTCTGGCAGTGGTGATTCAACGGTTCGATTGTGGGATATCTCCTCTGGCGCGCTCCTAGATACTTGTGAGGTTGCTGCTAAGGCAGGACTTCTAGAGTCTAATGGTGAAGCAGAGGAGCATGGCCATGCTGTTACTGATTTGTGCACCACCATCAGCGGTTTGCTTATTGCTGTGGCCATTCAAAGCTTGCAAGGAATAGTATTGTTGAGCTGCGATGTTTCTGCACAAACACTTTCTGTTTCCAAGGTGGTTTCTATTGCGGGAGAGGCCTTTGTTCCTACCTGCTTGGGGTTCAGCCCCGCCGAAGGGAAGTTGTGGATGGTAACTGGTGTTTCTAGTTTACCTGCTTGTAACTACCCGCCGTTGGCTCGCGTGCGAGTAATCTCTGCTATTGATGCTGAGCAAGAGCCAGTAGTTTTGGGAGATGATGAGATACCTGGCGGAGAGAAGCTGCTAGAAACGTTGCAAGGAAGTGCTTCTGTTGATGAGAGTGCTTTCTTGGCTGCAGCTGAAGCTGTCAAAACAGCAATGCGCAACCTATTGATTAAAAAGCAATACCCTGCAGATAATAGAGAATCTAGGAAGAAAACTAGAAATGATAGAAAACTGAAAATGTGA 1290 0.5016 MEEAEAEAEVESNRDNVEVAPALIAVHPEQISVAVAVGPDLRVFDLLAGSAASLVDECGAPFHKDPIRAIRFGSRGKLFVSAGDDKTVKIWSTESWRCVCTVSSEKRVSAVAISEDGCHVCFADKFGVVWVVDVAGSHGHVTLGDRKPTPLLSHYCSIIPSLEFSPDGRFILSADRDSKIRVTNFPKKPLNGAHEIQSFCLGHTEFVSCLAFVHARECPQGLLVSGSGDSTVRLWDISSGALLDTCEVAAKAGLLESNGEAEEHGHAVTDLCTTISGLLIAVAIQSLQGIVLLSCDVSAQTLSVSKVVSIAGEAFVPTCLGFSPAEGKLWMVTGVSSLPACNYPPLARVRVISAIDAEQEPVVLGDDEIPGGEKLLETLQGSASVDESAFLAAAEAVKTAMRNLLIKKQYPADNRESRKKTRNDRKLKM* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1122 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 95 - -
Ahy6g1122 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Ahy6g1122 429 SMART WD40_4 95 133 IPR001680 GO:0005515
Ahy6g1122 429 SMART WD40_4 145 184 IPR001680 GO:0005515
Ahy6g1122 429 SMART WD40_4 192 236 IPR001680 GO:0005515
Ahy6g1122 429 SMART WD40_4 51 92 IPR001680 GO:0005515
Ahy6g1122 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 240 - -
Ahy6g1122 429 ProSitePatterns Trp-Asp (WD) repeats signature. 223 237 IPR019775 -
Ahy6g1122 429 Gene3D - 60 336 IPR015943 GO:0005515
Ahy6g1122 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 245 IPR001680 GO:0005515
Ahy6g1122 429 PANTHER WD40 REPEAT PROTEIN 4 22 426 IPR028884 GO:0036265
Ahy6g1122 429 SUPERFAMILY WD40 repeat-like 61 332 IPR036322 GO:0005515
Ahy6g1122 429 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 30 421 IPR028884 GO:0036265
Ahy6g1122 429 Pfam WD domain, G-beta repeat 63 92 IPR001680 GO:0005515
Ahy6g1122 429 Pfam WD domain, G-beta repeat 153 182 IPR001680 GO:0005515
Ahy6g1122 429 Pfam WD domain, G-beta repeat 200 236 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1122 Ahy-Chr6 16478108 16480762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1122 63 257 Miscellaneous Gene Families AT5G08390 24.873 3.95e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1122 K15443 - gmx:100786310 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0199 16 2088761 2091384 Ahy6g1122 6 16478108 16480762 hybridization