Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1029 ATGAAAAAACGTCTCCTTCTATACTCATTAAGCTCAACCCTTAAAGCCAAATACAAAGCGTTCTATTTCTATATCTCGTCCGTATCACTTTCGAGTGAACAATCAAAATGGAATCCGTCAACCAACGTTGTCATTACGAACCCAACCCTGGTGGCCATGGAGTCTTGCTCCACCATGCGCCAGCTGAGGCAGATCCAGGCCCGCATGATCCGCACGGGCCTCATGGACCACACATTCCCAGCCAGCAGAGCCCTAGCTTTCTGTGCCCTCTCCGACTCCGGAGACGTTCGTTATGCCCACGCTGTCTTCGACCGTATTGAACAACCCAACACGTTCATGTGGAACACCATGATCAGGGGCTACAGCAGGGCCAATGTTCCTGCTATGGCGTTTTCCTTCTTTCTCCGAATGCTTCGCCAACTCTCCGAGATGGACTGCAGAACCTTCGTTTTTTCGCTCAAGGCGTGCGAGCAGTTCTCGGGTTCTGTTGAGGGGGAATCGGTGCACTGTTTGATTCGGAAGACGGGCTTCGATTCTGAGTTGGTAGTGCGAAATGGGTTGGTTCACTTTTATGCTGAACGTAGTTGGCTGAAAAGTGCGCGCCAGGTGTTTGATGAAAGTTCTGAGAGGGATGTTGTTGCTTGGACCACAATGATTGATGGCTATGTGGGAAATAAGTCTTCAGATTCGGCTTTGGAATTGTTTGGTTTGATGTTGAGTAGTGGTGTTGAGCCCAATGAGGTGACCTTGATTACGGTGCTCTCCGCGTGTTCCCAGAAGGGTGATCTTGTCATGGGAAGGAGTATCCATGAAGACATAGCAAGGAAGAATGTAAGGCATACTTTGAGTTTAAATAATGCATTGTTGGACATGTATGTGAAATGTGGTAGTTTGATGGCTGCTAGAGAGCTTTTTGATAAAATGGAGATTAAGGATGTTTTCTCGTGGACTAGTTTGGTTAATGGGTATGCTAAATGTGGTGACTTGGAATCTGCAAGGAGGTTTTTTGATCAAACTCCTCATAAAAACGTGGTCTCATGGAATGCAATGATTGCAGGATATTCTCAGAACAACAAACCCAAAGAATCAATAAAATTGTTTCGGGAAATGATCGCAGCAGGTATGGTTCCCAGCGAGCATACCTTAGTCAGTGTGCTCTCTGCTTGTGGCCAGCTGAGTTGCTTGAATTTGGGACACTGGATTCATCACCATTTTGTCAATGAGAAAAGGGTGCACCTTAGTGTGACTATGGGAAATGCAATTATAGACATGTACGCCAAGTGTGGAAGCATTGATGCAGCAGCAGAAGTCTTTAAAGTAATGCCAGTAAGAAGCCTGATTTCTTGGAATTCCATGATTGCATCCTATGCTGCTCATGGCCGAGCAAAGCAAGCTATCGTTGTATTTGATCAGATGGTATCTATGGGATTTAGGCCAGATGATGTTACATTTGTGAGCTTGTTAACAGCTTGCAGCCATGGTGGGTTAGTTTCCGAAGGACAAGAATATTTTGACACCATGGAAACGAAGTATGGGGTAAAGCCCAAAAGGGAACACTATTCGTGCATGATTGATCTACTTGGTCGAACAGGGCTTCTTGAAGGAGCTTACAAGTTAATAACGAGTATGCCAATGCAACCTTGTGAAGCTGCTTGGGGTGCGCTTTTAAATGCGTGTAGAATGCATGGGAATGTCGAGCTTGCTAAATTGTCAGCTGGTAACCTTATGAGGTTGAATCCAGAAGACAGTGGAACATATATTCTGCTGGCAAATATCTGTGCCAATGATCGAAACTGGGGCGATGTGAGGAGGGTGCGAAGTTTGATGAGAGACAAAGGTGTGAAGAAGATTGCTGGTCATAGCTTGATAGAGATACAGGGTGAATTTAAGGAATTTTTGGTTGCTGATGAATCAAACACTCAATCTGAGGAGATCTATAAAGTACTGGATCTAATATATTTGTTGGCAAAATTGGAAGACTATGACTCTGAGTTATTTATTATAGGCTTCAATGGCTAA 2019 0.4463 MKKRLLLYSLSSTLKAKYKAFYFYISSVSLSSEQSKWNPSTNVVITNPTLVAMESCSTMRQLRQIQARMIRTGLMDHTFPASRALAFCALSDSGDVRYAHAVFDRIEQPNTFMWNTMIRGYSRANVPAMAFSFFLRMLRQLSEMDCRTFVFSLKACEQFSGSVEGESVHCLIRKTGFDSELVVRNGLVHFYAERSWLKSARQVFDESSERDVVAWTTMIDGYVGNKSSDSALELFGLMLSSGVEPNEVTLITVLSACSQKGDLVMGRSIHEDIARKNVRHTLSLNNALLDMYVKCGSLMAARELFDKMEIKDVFSWTSLVNGYAKCGDLESARRFFDQTPHKNVVSWNAMIAGYSQNNKPKESIKLFREMIAAGMVPSEHTLVSVLSACGQLSCLNLGHWIHHHFVNEKRVHLSVTMGNAIIDMYAKCGSIDAAAEVFKVMPVRSLISWNSMIASYAAHGRAKQAIVVFDQMVSMGFRPDDVTFVSLLTACSHGGLVSEGQEYFDTMETKYGVKPKREHYSCMIDLLGRTGLLEGAYKLITSMPMQPCEAAWGALLNACRMHGNVELAKLSAGNLMRLNPEDSGTYILLANICANDRNWGDVRRVRSLMRDKGVKKIAGHSLIEIQGEFKEFLVADESNTQSEEIYKVLDLIYLLAKLEDYDSELFIIGFNG* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1029 672 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 318 660 - -
Ahy6g1029 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Ahy6g1029 672 Gene3D Tetratricopeptide repeat domain 419 643 IPR011990 GO:0005515
Ahy6g1029 672 Gene3D Tetratricopeptide repeat domain 44 158 IPR011990 GO:0005515
Ahy6g1029 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Ahy6g1029 672 Gene3D Tetratricopeptide repeat domain 271 396 IPR011990 GO:0005515
Ahy6g1029 672 Gene3D Tetratricopeptide repeat domain 164 270 IPR011990 GO:0005515
Ahy6g1029 672 TIGRFAM PPR: pentatricopeptide repeat domain 447 480 IPR002885 -
Ahy6g1029 672 TIGRFAM PPR: pentatricopeptide repeat domain 314 338 IPR002885 -
Ahy6g1029 672 TIGRFAM PPR: pentatricopeptide repeat domain 345 379 IPR002885 -
Ahy6g1029 672 TIGRFAM PPR: pentatricopeptide repeat domain 213 247 IPR002885 -
Ahy6g1029 672 TIGRFAM PPR: pentatricopeptide repeat domain 113 139 IPR002885 -
Ahy6g1029 672 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 32 324 - -
Ahy6g1029 672 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 318 660 - -
Ahy6g1029 672 Pfam E motif 562 624 IPR046848 -
Ahy6g1029 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 140 IPR002885 -
Ahy6g1029 672 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 32 324 - -
Ahy6g1029 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Ahy6g1029 672 Pfam PPR repeat 112 139 IPR002885 -
Ahy6g1029 672 Pfam PPR repeat 286 311 IPR002885 -
Ahy6g1029 672 Pfam PPR repeat 314 338 IPR002885 -
Ahy6g1029 672 Pfam PPR repeat 519 544 IPR002885 -
Ahy6g1029 672 Pfam PPR repeat 419 443 IPR002885 -
Ahy6g1029 672 Pfam PPR repeat family 342 389 IPR002885 -
Ahy6g1029 672 Pfam PPR repeat family 210 257 IPR002885 -
Ahy6g1029 672 Pfam PPR repeat family 446 492 IPR002885 -
Ahy6g1029 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 342 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1029 Ahy-Chr6 13692162 13694566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1029 99 650 Glycoside Hydrolase AT3G49170 33.453 9.43e-97 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1029 - - ccaj:109796361 984.941