Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0819 ATGAATCAATTGGCGGATTTCGGACGCATATTCCAAATGTTTGATCATGATGACGACGGGAAGATCTCAAAGGGGGAGCTTTTAGAGTCCGTAACAAAACTAGGGTTAGGCGTCATGAAGCATGATTTGATTCAAATGATCGCGAGACTCGACGCGAATGGCGACGGATACGTAGATTTTGACGAGTTTGAGAGGTTGTACAAGAGCGTAATGGGTGACGACGACGTCTGCGGCGGCGGCGGCGACGAGGAAGAGGACATGAAGGAGGCTTTCCAATTGTTCGATCAAAATGGCGACGGGTTTGTAAGTGGTGAGGAATTGAGTTCGGTTTTGTGTTCATTGGGATTAAGGCAAGGAAAGAAGACCTTAGAGGATTGCAAGAACATGATCAAGAAAGTGGATTTGGATGGCGATGGCATGCTTGATTTCAAAGAGTTTAAGCAAATGATTAAGCTTGTCAACTAA 465 0.4538 MNQLADFGRIFQMFDHDDDGKISKGELLESVTKLGLGVMKHDLIQMIARLDANGDGYVDFDEFERLYKSVMGDDDVCGGGGDEEEDMKEAFQLFDQNGDGFVSGEELSSVLCSLGLRQGKKTLEDCKNMIKKVDLDGDGMLDFKEFKQMIKLVN* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0819 154 ProSiteProfiles EF-hand calcium-binding domain profile. 121 154 IPR002048 GO:0005509
Ahy6g0819 154 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Ahy6g0819 154 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 5 151 - -
Ahy6g0819 154 Gene3D - 1 73 - -
Ahy6g0819 154 SUPERFAMILY EF-hand 2 153 IPR011992 -
Ahy6g0819 154 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Ahy6g0819 154 ProSitePatterns EF-hand calcium-binding domain. 134 146 IPR018247 -
Ahy6g0819 154 Pfam EF-hand domain pair 9 68 IPR002048 GO:0005509
Ahy6g0819 154 Pfam EF-hand domain pair 84 150 IPR002048 GO:0005509
Ahy6g0819 154 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Ahy6g0819 154 SMART efh_1 86 114 IPR002048 GO:0005509
Ahy6g0819 154 SMART efh_1 6 34 IPR002048 GO:0005509
Ahy6g0819 154 SMART efh_1 42 70 IPR002048 GO:0005509
Ahy6g0819 154 SMART efh_1 125 153 IPR002048 GO:0005509
Ahy6g0819 154 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 5 151 - -
Ahy6g0819 154 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Ahy6g0819 154 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Ahy6g0819 154 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Ahy6g0819 154 CDD EFh 86 151 IPR002048 GO:0005509
Ahy6g0819 154 Gene3D - 74 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0819 Ahy-Chr6 10258089 10258624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0819 5 151 EF-hand Containing Proteins AT2G43290 55.782 1.09e-48 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0819 K13448 - gmx:100806637 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0513 16 9427087 9427696 Ahy6g0819 6 10258089 10258624 hybridization