Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0654 ATGCAACTGTTCCTCAACTGCTTGCAGAGGTTTCTTGCAACTGCTTCTCAACAACACCGGAGGAACACACACATGAAAGGTCTAGTGGCTGTGCTTTTGCTTGTAGCATTGAGCACTGCACTGGAAAGCAATGGAGAAGAATATAGTCTTGGGCCATGTGAGCAGAAAGCAAGGAACAATGCTAGGCCTCACAGTGTTTCCATCTTGGAATTTGGGGCAGTTGGAGATGGGAAAACTTTGAATACAGTTGCATTTCAAAATGCTATATTCTATCTCAAGTCATTCACTGATAAGGGTGGTGCTCAACTATATGTTCCTTCTGGCAAATGGCTAACTGCAAGTTTAAACCTTATTAGCCACCTCACTCTCTTCCTTGAAAGAGGAGCTACCATCATTGCATCTCAGGAATATGATCATTGGGATGTTGTGGATTCTCTCCCATCTTATGGTCGGGGAATTAATGTTCCAAGTGGGAGATATCGCAGCTTGATTTATGGACAGAATTTGACTGATGTGGTGATTACAGGTGATAATGGAATTATTGATGGTCAGGGTTCTATCTGGTGGGAACTTTTCAAATCACATTCCTTAAATCACAGTCGACCGCATCTTGTAGAGTTTGTTGATTCTGTTGATGTCACAATTTCCAACTTGACATTTCTAAACTCTCCTGCATGGGACATTCATCCAGTATATTGCAGCAATGTCCAAATTCTGAACATAACAGCTACTGCACCTGCTGAATCTCCATACACAAGTGGTATAGTCCCAGATTCTTCTCAGAATGTTTGTATTGAAAGCAGCAACATTAGCACTGGTCATGATGCAATTGTGCTAAAGAGTGGATGGGATCGGTATGGTGTTGCCTTTGGAAAACCATCCTCAAATGTCCACATCAGGGGTGCTTACCTACAATCATCATCCGGCGCCGGCCTAGCATTCGGGAGTGAGATGTCCGGAGGTATATCTGATGTAACTGCAGAGCAGCTTCATATACTCAACTCCCGCATTGGCATTGAACTGAAGACAACTAAGGGAAGAGGTGGCTATATGAAAGGCATCTTAATTTCTGATGCAGATTTGGTAAATATTGATTTGGGTATCAGCATGAGTGGAAACACTGGTCTCCATCCAGATGAAGAGTATGATCCAAGTGCACTTCCTGTTGTTGATGGCATTACTTTTAAGAACATGATTGGTTCAAATATCACTGTTGCTGGAAACTTTTCAGGTTTAATTGATTCACCATTCACAACAATTTGTCTTTCAAACTTGAATTTCTCTGTCAGTTCTTCATGGTCTTGTTCTAATGTGATCGGTTTCTCCAGTGAGGTGTTTCCTGAGCCATGTCCTGAGCTTCATAACTCAGATTCAAAGTCTTCCTCTTGCTTTTCTTCTCTATACTCACCCTCTAGTTATATCTCGAGCTTATTCAATCAACATCCACAAGAATCATAG 1458 0.4177 MQLFLNCLQRFLATASQQHRRNTHMKGLVAVLLLVALSTALESNGEEYSLGPCEQKARNNARPHSVSILEFGAVGDGKTLNTVAFQNAIFYLKSFTDKGGAQLYVPSGKWLTASLNLISHLTLFLERGATIIASQEYDHWDVVDSLPSYGRGINVPSGRYRSLIYGQNLTDVVITGDNGIIDGQGSIWWELFKSHSLNHSRPHLVEFVDSVDVTISNLTFLNSPAWDIHPVYCSNVQILNITATAPAESPYTSGIVPDSSQNVCIESSNISTGHDAIVLKSGWDRYGVAFGKPSSNVHIRGAYLQSSSGAGLAFGSEMSGGISDVTAEQLHILNSRIGIELKTTKGRGGYMKGILISDADLVNIDLGISMSGNTGLHPDEEYDPSALPVVDGITFKNMIGSNITVAGNFSGLIDSPFTTICLSNLNFSVSSSWSCSNVIGFSSEVFPEPCPELHNSDSKSSSCFSSLYSPSSYISSLFNQHPQES* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0654 485 PANTHER POLYGALACTURONASE-RELATED 29 469 - -
Ahy6g0654 485 Gene3D - 51 445 IPR012334 -
Ahy6g0654 485 SMART pbh1 260 281 IPR006626 -
Ahy6g0654 485 SMART pbh1 294 316 IPR006626 -
Ahy6g0654 485 SMART pbh1 233 259 IPR006626 -
Ahy6g0654 485 SMART pbh1 385 407 IPR006626 -
Ahy6g0654 485 SMART pbh1 351 372 IPR006626 -
Ahy6g0654 485 SMART pbh1 322 343 IPR006626 -
Ahy6g0654 485 SMART pbh1 210 230 IPR006626 -
Ahy6g0654 485 Pfam Glycosyl hydrolases family 28 161 438 IPR000743 GO:0004650|GO:0005975
Ahy6g0654 485 PANTHER PECTIN LYASE-RELATED 29 469 - -
Ahy6g0654 485 SUPERFAMILY Pectin lyase-like 60 454 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0654 Ahy-Chr6 8087037 8090572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0654 25 465 Glycoside Hydrolase AT3G16850 58.916 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0654 - - aip:107645668 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0661 16 12232053 12235446 Ahy6g0654 6 8087037 8090572 hybridization