Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0598 ATGTCGGAATCCGGCGGCGGAGCCACCAACAACAACCACCTCATCAATCGGTGGACCGGGAGGCCTTTTTCGCAGAGGTACTTTGAGATTCTGGAGAAGAGGAAGAGTCTTCCCGTTTGGCAGCAGAAACACCAGTTCTTGCGAACTCTCGCCCATAACCAGATTCTCATTCTCGTCGGTGAAACTGGCAGTGGCAAAACCACGCAGATTCCTCAATTTGTTTTGAATGCTGTTGATTTAGAAACACCAGATAAATGCAGGAAGATGATGATTGCGTGCACTCAGCCTCGGAGAGTGGCTGCAATGTCTGTTTCCCGGCGTGTGGCTGAAGAGATGGATGTAACGATTGGAGAAGAGGTTGGTTATAGTATCAGATTTGAAGACTGCAGCAGTTCAAGGACAGTTTTGAAGTATCTCACAGATGGTATGCTTTTAAGAGAAGCAATGACAGATCCACTCTTGGAACAATATAAAGTAATTATTCTCGATGAGGCACATGAAAGGACTTTGGCTACAGATGTGCTATTTGGCCTTATAAAGGAAGTTCTTAAAAATAGACATGACTTAAAGTTAGTCGTAATGAGTGCGACTCTAGAAGCTGAAAAGTTCCAGGGCTACTTTAGTGGTGCCCCTCTTATGAAAGTTCCAGGAAGGCTGCATCCTGTTGAAATTTTTTATACTCAGGAACCTGAAAGAGATTACCTGGAGGCTGCTATTAGGACGGTGATGCAGATACACATGGGCGAACCTTCTGGGGATATACTTGTTTTTCTAACGGGAGAGGAAGAGATAGAAGATGCATGCCGCAAAATATCTAAAGAAATTTCAAATTTGGGAGATCAGGTGGGCCCTGTGAAAGTGGTATCCCTCTATTCCACTCTTCCCCCAGCTATGCAGCAGAAAATTTTTGAACCACCTCCACCTCCACTAAAGGAGGGTGGGCCTCCTGGAAGGAAAATTATTGTGTCAACAAACATAGCTGAAACCTCCTTAACAATTGATGGCATTGTCTATGTTATTGACCCTGGTTTCTCTAAGCAGAAGGTTTATAACCCACGAGTTCGTGTTGAGTCTTTATTAGTGTCACCAATATCAAAAGCAAGTGCGCATCAGAGATCAGGACGTGCTGGAAGAACTCAACCAGGGAAATGTTTTAGACTTTATACTGAGAAAAGTTTCAATAACGATCTACAGCCTCAGACCTATCCCGAAATTTTGAGATCAAATCTTGCCAACTCTGTTCTTACCTTGAAGAAACTGGGTATAGATGATTTAGTGCATTTTGATTTCATGGACCCTCCTGCCCCTGAGACCTTGATGCGTGCATTGGAAGTGTTGAATTACTTGGGAGCACTGGACGATGATGGTACCTTAACAAAGTTGGGAGAGATTATGAGTGAATTTCCCTTGGATCCACAGATGTCAAAGATGCTTATTGTGAGTCCCGAATTCAACTGTTCAAATGAGATTCTGTCAATGTGTGCCATGCTTTCAGCCCCCAATTGCTTTGTCCGGCCTAGGGAAGTACAAAAAGCTGCTGATGAAGCTAAAGCTAGGTTTGGGCACATTGATGGGGATCATCTCACACTCTTGAATGTCTACCATGCATACAAGCAAAATAATGAGGATCCCTCTTGGTGCTACGATAACTTTGTTAATCAAAGGGCACTGAAATCAGCTGATAATGTTAGACAACAGTTAGTGCGTATCATGGCCCGGTTTAGCCTCAAGTTATGCAGCACCGACTTCAATAGCCGTGACTACTACATCAACATAAGGAAAGCTATGCTAGCTGGATATTTCATGCAGGTAGCTCATCTGGGGCGAACAGGACATTACTTGACAGTGAAAGACAATCAGGTGGTGCATTTGCATCCATCAACTTGTCTTGACCACAAACCTGAATGGGTTATCTATAATGAATATGTTCTTACTAGTCGAAATTTTATTCGCACTGTGACGGACATTCGTGGGGGGTGGTTGGTTGATATAGCACCACACTACTATGATTTGTCAAATTTTCCTCATTGTGAGGCCAAGGGTGTTCTTGAGAGACTCTACAAGAAGAAAAAGAAGGGAAAGGAGGAAGCCAGGAAGCACAAATGA 2106 0.4354 MSESGGGATNNNHLINRWTGRPFSQRYFEILEKRKSLPVWQQKHQFLRTLAHNQILILVGETGSGKTTQIPQFVLNAVDLETPDKCRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSSRTVLKYLTDGMLLREAMTDPLLEQYKVIILDEAHERTLATDVLFGLIKEVLKNRHDLKLVVMSATLEAEKFQGYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVMQIHMGEPSGDILVFLTGEEEIEDACRKISKEISNLGDQVGPVKVVSLYSTLPPAMQQKIFEPPPPPLKEGGPPGRKIIVSTNIAETSLTIDGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANSVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGTLTKLGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSMCAMLSAPNCFVRPREVQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNQRALKSADNVRQQLVRIMARFSLKLCSTDFNSRDYYINIRKAMLAGYFMQVAHLGRTGHYLTVKDNQVVHLHPSTCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGGWLVDIAPHYYDLSNFPHCEAKGVLERLYKKKKKGKEEARKHK* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0598 701 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 47 216 IPR014001 -
Ahy6g0598 701 PANTHER ATP-DEPENDENT RNA HELICASE 12 701 - -
Ahy6g0598 701 CDD DEXHc_DHX15 25 215 IPR044756 GO:0003724|GO:0005524
Ahy6g0598 701 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 238 421 IPR001650 -
Ahy6g0598 701 CDD SF2_C_RHA 220 388 - -
Ahy6g0598 701 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 592 668 IPR011709 -
Ahy6g0598 701 Pfam Helicase conserved C-terminal domain 244 379 IPR001650 -
Ahy6g0598 701 Pfam Helicase associated domain (HA2) 442 530 IPR007502 GO:0004386
Ahy6g0598 701 Gene3D - 3 218 IPR027417 -
Ahy6g0598 701 SMART ultradead3 35 225 IPR014001 -
Ahy6g0598 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 587 IPR027417 -
Ahy6g0598 701 Pfam AAA domain 52 197 IPR003593 -
Ahy6g0598 701 Gene3D - 425 534 - -
Ahy6g0598 701 SMART helicmild6 262 380 IPR001650 -
Ahy6g0598 701 SMART ha2_5 441 531 IPR007502 GO:0004386
Ahy6g0598 701 Gene3D - 219 401 IPR027417 -
Ahy6g0598 701 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH3-RELATED 12 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0598 Ahy-Chr6 7363462 7367424 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0598 K12820 - gmx:100819776 1251.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0740 16 13446040 13448654 Ahy6g0598 6 7363462 7367424 hybridization