Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0517 ATGAAGTTCATAGGCTCAGTGTTAGTGGTGACTTTTGCTCTGGTTTTAGCCTCAACCTCAGCATCAGATCCTGATGCTCTTCAAGACCTCTGTGTTGCAGACACTAAATCTGGTGTTAAGGTGAATGGATTCACGTGTAAAGACGCTGCAAAAGTGAATGCATCTGATTTCTCATCAAACATATTAGCAAAACCAGGTGTGGCAGCAAACACAACCTTCGGTTCCATTGTAACAGGAGCCAACGTTGAAAAGATCCCAGGATTGAACACACTTGGTGTGTCTCTGGCACGCATTGACTATGCCCCAGGTGGACTCAACCCACCCCACACACACCCACGTGCCACTGAGATTGTGTTTGTTCTTGAAGGTCAACTTGATGTTGGGTTCATAACAACATCCAATGTTCTCATATCAAAGACCATCTACAAGGGTGAGATCTTTGTCTTCCCAAAAGGGTTGGTTCACTTCCAGAAGAACAATGCCAATGAACCTGCTGCAGTTATTTCAGCCTTCAACAGCCAATTGCCTGGAACACAATCTATTCCTCTGACTTTGTTTGCTGCCACCCCACCGGTCCCGGATAACGTGTTGACCAAGGCATTCCAGGTTGGTACCAAGGAGATTGAGAAAATCAAGTCTAGGCTTGCTCCCAAGAAGTAA 660 0.4576 MKFIGSVLVVTFALVLASTSASDPDALQDLCVADTKSGVKVNGFTCKDAAKVNASDFSSNILAKPGVAANTTFGSIVTGANVEKIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVLEGQLDVGFITTSNVLISKTIYKGEIFVFPKGLVHFQKNNANEPAAVISAFNSQLPGTQSIPLTLFAATPPVPDNVLTKAFQVGTKEIEKIKSRLAPKK* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0517 219 SMART Cupin_1_3 59 209 IPR006045 -
Ahy6g0517 219 ProSitePatterns Germin family signature. 104 117 IPR019780 GO:0030145
Ahy6g0517 219 Gene3D Jelly Rolls 22 217 IPR014710 -
Ahy6g0517 219 SUPERFAMILY RmlC-like cupins 23 214 IPR011051 -
Ahy6g0517 219 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 10 217 - -
Ahy6g0517 219 Pfam Cupin 70 208 IPR006045 -
Ahy6g0517 219 PRINTS Germin signature 109 129 IPR001929 GO:0030145
Ahy6g0517 219 PRINTS Germin signature 139 159 IPR001929 GO:0030145
Ahy6g0517 219 PRINTS Germin signature 172 187 IPR001929 GO:0030145
Ahy6g0517 219 PANTHER GERMIN-LIKE PROTEIN 10 217 - -
Ahy6g0517 219 CDD cupin_OxOx 23 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0517 Ahy-Chr6 6312063 6313502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0517 8 219 Miscellaneous Gene Families AT3G05930 58.962 1.14e-87 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0517 - - gmx:100302722 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0835 16 14942084 14943559 Ahy6g0517 6 6312063 6313502 hybridization