Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0512 ATGAAACTTGGGTTTCTACTAATAAGACAGTATGTTATTAGCAGAAGAAGCAAATTTGCAGTGCAATTCCATGAATATCATCACTCAGCAGATCAGCTGAATTCCGTCATCAACAATGCTTCCCAATTCAAGAACCTCAAACACGCCACGCAAATCCACACCCAAATCATCACAGCCAACTACGCCTCCCACCCTATACTCTTCAACAACCTCCTCCTCCTGTACGCCAAATGCGGTTCCATCCACCACTCCCTCCTCTTCTTTACCTCAACCCCACGCGCCTCCATCAACGTCGTCACTTTCACCACCCTCATCACCTACCTCTCGCGTTTTAACAACCCATTCCTTGCCATCTCGTACTTCAACCGCATGAGATGCACCGGCATTTATCCCAACAATTACACATTCTCTGCCGTCTTGCCCGCTTGCGCCCACACAAACCTTGTTACCCACGGTCAACAACTGCATGCTTTGGTTTATAAACATGGATTTGACACTGATACCTTTGTGGCTAGTGCCTTGCTTGACATGTACGCTAAGTGTGGCTCTATGTCTTTGGCACAGAAGGTGTTCGATGAAATGCCCCATAGAAACCTTGTCTCTTGGAACTCTTTGATTGTTGGGTTTTTGAAAAATAACTTGTATCATCGTGCTATTGGGATTTTCAGGGAGGTTGTCCGCCAGGCCTCGCTTCCTCCTGATCAGGTTAGCTTTTCGGGTGTGTTTGCTGCTTGTGCTGCTGTGGTTGACATGGATTTCGGCAAGCAGGTGCATGGGAATGGTTTGAAGCGTGGTTTACTTGTATTGGTTTATGTGAAGAACTCGTTGGTGGACATGTACAGTAAATGCAGGTTGTTTGATGATGCGGCCAAGTTGTTCCATGCTGATGGAGAGAAAGATGTTGTTACCTGGAATGTAATGATCATGGGATGTGTACACAGTGAACACTTTGAGGAAGCTTGCAGCTATTTCAGGGCCATGAAGAGGGAAGGCTTCTTGCCAGATGAAGCTTCGTATTCCTCTGTTCTTCATGCTTGTGCTAGCATTGCTGCTTTAACTCAAGGAACCTTGATCCACAACCAGATATTAAAGCTTGGACATGTAAAAAATGCATGTGTATCGAGCTCACTGGTAATGATGTATGGCAAATGTGGGAACTTGTTTGATGCTTATCGGGTATTTGAAGAAACTGAGCATCGCAATGTGGTTTGTTGGACAGCTATGATAGCGGTTTGCCACCAACATGGCTGCGCAAATGAAGCAATTGGGTTATTTGAGGACATGCTCAAAGAGGGAATTGTGCCTGAGCACATCACTTTTGTTTCTGTGCTGTCAGCTTGCAGCCATACTGGACAGGTTGAAGATGGATTTAGGTACTTCAATTCCATGAATAACATCCATAATATAGAACCTGGGCTTGAACATTATGCTTGCATGGTTGATCTGCTTGGTCGTGTTGGGCGGTTGGATGAAGCATGGAAGTTCATTGAATCAATGCCAATCAAGCCTGACTCATCAACTTGGGGGGCTTTGCTTGGAGCATGCGGAAAGTACGGCAATCTTGAAATGGGCAGGGAGGTTGCGGACAAGCTATTCGAGTTGGAACCAGATAATCCAGGAAACTATGTGCTTCTTTCTAATATCTATTTACGACATGGGATGTTGGAAAAAGCTAATGAGGTCAGGCAATTGATGGGGATCAAGGGGGTAAGGAAAGAGATTGGATGTAGCTGGATTGATGTTAAGAACAAGACCTTTATATTCACTGTGAATGATAGGTCACATTCAAGGACCGATGAGATCTATGAAATGTTACAGAAGCTAAAGGAATTGGTAAAGAAGAGAGGATATGCTGCTGAGACACAGTTTGCAACCAACAGTGCAGAAGGGTCTGAAGAGCAGAGTTTGTGGTATCACAGTGAGAAATTAGCTCTTGCATTTGGTCTTCTGGTCCTCCCAGCTGGATCTCCTGTAAGGATAAAGAAGAATTTGAGGACTTGTGGTGATTGTCATACTGTTATGAAGTTTGCTTCGGAGATTTTTCAGAGAGAGATTATCGTAAGAGATATCAATAGGTTTCATCGATTCACTAATGGCTTGTGCTCGTGTAGAGATTATTGGTGA 2124 0.4435 MKLGFLLIRQYVISRRSKFAVQFHEYHHSADQLNSVINNASQFKNLKHATQIHTQIITANYASHPILFNNLLLLYAKCGSIHHSLLFFTSTPRASINVVTFTTLITYLSRFNNPFLAISYFNRMRCTGIYPNNYTFSAVLPACAHTNLVTHGQQLHALVYKHGFDTDTFVASALLDMYAKCGSMSLAQKVFDEMPHRNLVSWNSLIVGFLKNNLYHRAIGIFREVVRQASLPPDQVSFSGVFAACAAVVDMDFGKQVHGNGLKRGLLVLVYVKNSLVDMYSKCRLFDDAAKLFHADGEKDVVTWNVMIMGCVHSEHFEEACSYFRAMKREGFLPDEASYSSVLHACASIAALTQGTLIHNQILKLGHVKNACVSSSLVMMYGKCGNLFDAYRVFEETEHRNVVCWTAMIAVCHQHGCANEAIGLFEDMLKEGIVPEHITFVSVLSACSHTGQVEDGFRYFNSMNNIHNIEPGLEHYACMVDLLGRVGRLDEAWKFIESMPIKPDSSTWGALLGACGKYGNLEMGREVADKLFELEPDNPGNYVLLSNIYLRHGMLEKANEVRQLMGIKGVRKEIGCSWIDVKNKTFIFTVNDRSHSRTDEIYEMLQKLKELVKKRGYAAETQFATNSAEGSEEQSLWYHSEKLALAFGLLVLPAGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGLCSCRDYW* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0512 707 Pfam E motif 518 580 IPR046848 -
Ahy6g0512 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Ahy6g0512 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Ahy6g0512 707 Gene3D Tetratricopeptide repeat domain 353 647 IPR011990 GO:0005515
Ahy6g0512 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Ahy6g0512 707 Gene3D Tetratricopeptide repeat domain 14 153 IPR011990 GO:0005515
Ahy6g0512 707 Gene3D Tetratricopeptide repeat domain 260 352 IPR011990 GO:0005515
Ahy6g0512 707 Gene3D Tetratricopeptide repeat domain 154 258 IPR011990 GO:0005515
Ahy6g0512 707 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 24 700 - -
Ahy6g0512 707 Pfam DYW family of nucleic acid deaminases 616 707 IPR032867 GO:0008270
Ahy6g0512 707 Pfam PPR repeat family 97 144 IPR002885 -
Ahy6g0512 707 Pfam PPR repeat family 400 448 IPR002885 -
Ahy6g0512 707 Pfam PPR repeat family 299 347 IPR002885 -
Ahy6g0512 707 SUPERFAMILY TPR-like 377 561 IPR011990 GO:0005515
Ahy6g0512 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Ahy6g0512 707 Pfam PPR repeat 172 198 IPR002885 -
Ahy6g0512 707 Pfam PPR repeat 476 499 IPR002885 -
Ahy6g0512 707 Pfam PPR repeat 200 227 IPR002885 -
Ahy6g0512 707 Pfam PPR repeat 274 294 IPR002885 -
Ahy6g0512 707 PANTHER OS07G0578800 PROTEIN-RELATED 24 700 IPR045215 GO:0003723|GO:0009451
Ahy6g0512 707 TIGRFAM PPR: pentatricopeptide repeat domain 302 336 IPR002885 -
Ahy6g0512 707 TIGRFAM PPR: pentatricopeptide repeat domain 99 132 IPR002885 -
Ahy6g0512 707 TIGRFAM PPR: pentatricopeptide repeat domain 403 435 IPR002885 -
Ahy6g0512 707 TIGRFAM PPR: pentatricopeptide repeat domain 200 234 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0512 Ahy-Chr6 6236880 6240198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0512 94 707 Glycoside Hydrolase AT3G49170 40.449 4.04e-163 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0512 - - ccaj:109797249 1068.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0840 16 15038968 15042403 Ahy6g0512 6 6236880 6240198 hybridization