Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3258 ATGGATACCAAGGGAAGACTCATTGCAGGGTCTCATAACAGGAATGAGTTTGTTCTTATCAATGCTGATGACACTGCAAGAGTGAATGCTGTTACAGAATTGAGTGGACAAATATGCCAGATCTGTGGTGATGAAGTAGAGGTCACAATTAATGGTGATCCATTTGTTGCTTGCAATGAGTGTGCATTCCCTGTTTGCAAGCCTTGCTATGAGTATGAAAGAAGAGAAGGGAACCAAGTTTGCCCTCAATGCAAAACAAGATACAACCGCATCAAAGGTTGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGGTGTTGATGATTTGGAGAATGAGTTTGATATTGGCAGCCACCCTCATCATCATCATCACATTGCTGAGACAATGCTATCTTCTCGCCTTAATGGTGGATTAGGAATCAGTACCACACCTTCAGAGTTTGATGCAGCTTCTGTGGCAGGTTCTGAGATCCCTCTACTAACTTATGGTCAAGAGGATGTTGGAATCTCTGCTGATAAACATGCCCTCATTATTCCCCCATTCATGCCTCGTGGAAAACGTGTTCATCCTATGCCTTTTCCTGATTCCTCTGTACCCGTTCAAGCAAGAGCTATGGATCCTAAGAAAGACTTGGCAGTTTATGGATATGGAAGTGTTGCATGGAAGGAAAGAATGGAGGACTGGAAGAAGAAGCAATGTGAAAAACTTCAAGTGGTTAAGCATGAAGGGTGTAAGGATCTTGATGAGTTTGATGACCCTGAGTTACCAAAAATGGATGAGGGGAGACAACCACTATGGAGAAAGTTGCCAATAAGTTCAAGCAGAATAAATCCATACAGAATAATCATAGTTCTCAGGATTGCAATTCTCTGCCTCTTCTTTCATTATAGAATTCTGCACCCTGTGAATGATGCATATGCATTGTGGCTCACATCAGTCATATGTGAAATCTGGTTTGCTGCTTCATGGATTCTTGATCAGTTCCCAAAATGGTGTCCAATTGAAAGAGAAACATACCTTGATCGTTTATCTTTAAGGTATGAGAAGGAAGGGAAGCCATCAGAATTAGCTTGTGTAGATGTATTTGTTAGTACTGTTGATCCTATGAAGGAGCCTCCACTTATCACTGCAAACACTGTTCTTTCAATCCTTGCTGTGGATTATCCAGTGGAGAAAGTTGCATGCTATGTCTCAGATGATGGTGCTGCCATGCTTACATTCGAAGCACTTTCAGAGACATCTGAGTTTGCAAGGAAGTGGGTTCCATTCTGCAAGAAGTTCAGCATTGAACCAAGAGCTCCTGAATGGTACTTTGCACAAAAAGTTGACTATCTCAAAGACAAAGTTGATGCAGCATTTATCAGAGAGCGTCGCGCTATTAAGAGGGAGTATGAAGAATTCAAGGTGAGGATTAATGCATTGGTTGCGACGGCACAGAAGGTTCCTGAGGATGGTTGGACAATGCAGGATGGGACTCTATGGCCTGGAAACAATGTTAGAGATCACCCTGGAATGATTCAGGTTTTCCTTGGTCAAAATGGTGTCCGCGACATTGAGGGAAACGAATTGCCTCGCCTTGTTTATGTGTCTCGTGAGAAAAGACCTGGATATGAGCACCACAAGAAAGCTGGAGCTATGAATGCTTTGGTGAGAGTTTCAGCAATTATCTCCAATGCTCCTTACCTGCTGAATGTTGATTGTGATCACTACATAAACAATAGTAAGGCCCTTCGTGAAGCCATGTGCTTTATGATGGATCCTACATCAGGGAAGAAAATTTGCTATGTACAATTTCCTCAAAGATTTGATGGGATCGATCGTCACGATAGATACTCAAATCGCAATGTTGTGTTCTTTGATATCAATATGAAAGGTTTAGATGGAATCCAAGGACCAATATATGTGGGAACTGGGTGTGTCTTCAGAAGGCATGCACTTTATGGATATGATGCCCCCTCTTCCAAGAAACCACCACGGAGGACGTGTAACTGTTGGCCTAAATGGTGTTGCTGCCTCTGTTGTGGATCTCAGAAGAAGAAGAACAAAGGGAAGCCAAGTATGAAAATGTTAAAGAATAAGGATGATACAAAGCACATACATACACTAGAAAACATAGAAGAGGGAATTGAAGGAGTTGAGAGTGAGAAGTCACTATTGATGTCTCAACTGAAATTTGAGAAAAAATTTGGGCAATCTGCTGTGTTCATAGCTGCAACACTTATGGAAGATGGAGGCCTTCCAAAAGCAGCAAGTTCTGCTACACTCTTGAAAGAAGCCATTCATGTAATTAGTTGTGGTTATGAAGATAAGACAGAATGGGGTAAAGAGGTTGGGTGGATATATGGCTCAGTTACAGAGGATATTCTAACAGGTTTCAAGATGCACTGTCATGGCTGGAGATCGGTTTATTGCATGCCGAAAAGGCCTGCTTTTAAGGGTTCAGCCCCTATAAATCTTTCTGACCGTCTGCATCAAGTTCTCCGGTGGGCGCTTGGATCGGTTGAGATCCTGTTTAGTAGGCATTGTCCTCTATGGTATGGCTATGGTTGCGGCTTGAAGTGGCTAGAGCGGTTTTCTTACATAAACTCAGTTGTTTATCCTCTCACTTCAATTCCCTTGATTGCCTACTGCACTTTGCCTGCTGTGTGTCTTCTCACTGGGAAGTTCATAGTCCCTGAGATTAGCAACTATGCCAGCATAATTTTCATGGCACTCTTCATCTCTATAGCTGCAACTAGCATATTGGAAATGCAATGGGGAGGAGTAGGCATACATGACTGGTGGAGGAATGAGCAGTTTTGGGTGATCGGTGGCGCCTCCTCGCACCTCTTTGCGCTCTTTCAAGGGTTGCTAAAGGTCCTAGCAGGAGTTAACACAAACTTCACTGTGACATCCAAAGCTGCAGATGATGGAGAGTTTGCTGAACTCTACATATTCAAGTGGACATCATTGTTGATTCCTCCATTGACATTGCTCATAATAAACATCATTGGAGTTATTGTTGGTGTCTCTGATGCCATAAACAATGGCTATGATTCTTGGGGTCCTCTCTTTGGGAAGCTGTTCTTTGCACTTTGGGTCATTGTACATCTTTATCCCTTCCTCAAGGGTGTTATGGGAAAACAAGAAGGTGTTCCTACAATCATTTTGGTTTGGGCTATTCTCCTTGCTTCAATCTTGACACTTCTTTGGGTGAGAATCAACCCCTTTTTGGCCAAAAATGACATTGTTTTGGAACTTTGTGGATTGAAGTGTGATTGA 3261 0.4256 MDTKGRLIAGSHNRNEFVLINADDTARVNAVTELSGQICQICGDEVEVTINGDPFVACNECAFPVCKPCYEYERREGNQVCPQCKTRYNRIKGCPRVEGDEEEDGVDDLENEFDIGSHPHHHHHIAETMLSSRLNGGLGISTTPSEFDAASVAGSEIPLLTYGQEDVGISADKHALIIPPFMPRGKRVHPMPFPDSSVPVQARAMDPKKDLAVYGYGSVAWKERMEDWKKKQCEKLQVVKHEGCKDLDEFDDPELPKMDEGRQPLWRKLPISSSRINPYRIIIVLRIAILCLFFHYRILHPVNDAYALWLTSVICEIWFAASWILDQFPKWCPIERETYLDRLSLRYEKEGKPSELACVDVFVSTVDPMKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFAQKVDYLKDKVDAAFIRERRAIKREYEEFKVRINALVATAQKVPEDGWTMQDGTLWPGNNVRDHPGMIQVFLGQNGVRDIEGNELPRLVYVSREKRPGYEHHKKAGAMNALVRVSAIISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRHALYGYDAPSSKKPPRRTCNCWPKWCCCLCCGSQKKKNKGKPSMKMLKNKDDTKHIHTLENIEEGIEGVESEKSLLMSQLKFEKKFGQSAVFIAATLMEDGGLPKAASSATLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEILFSRHCPLWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGKFIVPEISNYASIIFMALFISIAATSILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGEFAELYIFKWTSLLIPPLTLLIINIIGVIVGVSDAINNGYDSWGPLFGKLFFALWVIVHLYPFLKGVMGKQEGVPTIILVWAILLASILTLLWVRINPFLAKNDIVLELCGLKCD* 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3258 1086 PANTHER CELLULOSE SYNTHASE 1 1085 - -
Ahy5g3258 1086 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Ahy5g3258 1086 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Ahy5g3258 1086 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1085 - -
Ahy5g3258 1086 Pfam Cellulose synthase 359 1075 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ahy5g3258 1086 SUPERFAMILY Nucleotide-diphospho-sugar transferases 372 895 IPR029044 -
Ahy5g3258 1086 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Ahy5g3258 1086 SUPERFAMILY RING/U-box 26 107 - -
Ahy5g3258 1086 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 507 654 IPR029044 -
Ahy5g3258 1086 Pfam Zinc-binding RING-finger 31 105 IPR027934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3258 Ahy-Chr5 114651900 114658252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g3258 1 1085 Glycosyltransferase AT2G21770 77.747 0.0 1748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3258 K10999 - gmx:100798759 1976.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3676 15 159585191 159591589 Ahy5g3258 5 114651900 114658252 hybridization
Ahy5g3258 5 114651900 114658252 Ahy19g2794 19 149822063 149828255 PCT
Ahy5g3258 5 114651900 114658252 Ahy9g2802 9 117072002 117078565 PCT
Ahy19g2794 19 149822063 149828255 Ahy5g3258 5 114651900 114658252 PCT
Ahy9g2802 9 117072002 117078565 Ahy5g3258 5 114651900 114658252 PCT