Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3139 ATGGGAACTTCGGTGCAGGTAACGCCACTGTGTGGAGTGTACAACGAGAACCCTCTCTCCTATTTGGTCTCCATCGATGGCTTCAACTTCCTCGTCGACTGTGGCTGGAATGACCATTTTGACCCTTCCCTCCTTCATCCCCTCTCCAAGGTAGCACCAACTATTGATGCTGTGTTGCTTTCACATCCGGATACCCTTCACCTTGGTGCCCTCCCATATGCCATGAAGCAGCTCGGACTTGCTGCTCCGGTATTTTCAACTGAGCCTGTCTATAGATTGGGCCTTCTCACCATGTATGACCAGTTCCTCTCAAGAAAGCAAGTATCAGAGTTTGATCTGTTCACACTTGATGATATTGATTCTGCATTCCAAAGTGTAACAAAGCTAACATACTCTCAAAATCATCATTTCTCAGGCAAGGGAGAGGGAATTGTGATTGCACCTCACGTTGCTGGACATTTGTTGGGAGGCACTATATGGAAAATTACAAAGGATGGTGAGGATGTGATATATGCTGTTGATTTTAATCATCGGAGGGAAAGGCATTTGAATGGAACTGTTCTAGGTTCTTTTGTGAGACCAGCTGTTCTAATAACAGATGCTTACAATGCTTTGAACAATCAGCCTTACAGACGTCAAAAGGATAAAGAATTTGGTGATATCTTAAAGAAGACTCTAAGGGCAGGTGGCAATGTATTACTTCCTATTGACACTGCTGGACGGGTGTTGGAACTTATTTTGATTTTAGAATCGTACTGGGCTGACGAAAACTTGACCTATCCTATATACTTTCTGACTTATGTTGCATCCAGCACAATAGATTATGTGAAGAGTTTCCTTGAGTGGATGAGTGATTCCATAGCAAAGTCCTTTGAACAAACTCGTGAGAATATATTTCTTCTCAAGTATATCACACTTCTGATTAACAAGGCCGAGCTTGACAATGCTCCAGATGGTCCAAAGGTTGTCCTGGCATCCATGGCCAGCTTGGAAACTGGTTTTTCTCATGATATATTTGTTGAGTGGGCCAGCGACGTGAAAAATCTTGTGCTTTTTACTGAAAGAGGCCAGTATGCAACACTAGCTCGTATGCTTCAGGCTGATCCACCTCCAAAAGCCGTCAAAGTCACTGTGTCAAAGCGGGTTCCTTTAGTTGGGGACGAACTAATTGCCTATGAAGAAGAGCAAAATAGAATAAAGAAAGAAGAAGCTTTAAAAGCTAGTCTTATGAAAGAAGAAGAATTGAAAGCATCTCAGGGGCCTGATAATAATGTTAGTGATCCAATGGTTGTTGATGCTAGCAATGATCATCTATCAGCTGAAGCTGCTGGTCCACGAGGTGGAGGATACAGGGACATATTAATAGATGGGTTTGTTCCACCTTCAACAAGCATTGCCCCAATGTTTCCTTGTTATGAGAATACATCAGAGTGGGATGATTTCGGTGAAGTCATAAATCCAGATGATTATGTAATAAAGGATGAAGACATGGATCAGGGAGCAATGCATGCAGGAGGTGATATAAATGGAAAACTAGATGAAGGTGCTGCAAGTTTGATACTTGATACAAAGCCATCAAAAGTCATATCTGATGAAAGGACTGTACAAGTCAGATGTTCATTGGTGTATATGGACTTCGAAGGCCGGTCAGATGGAAGATCCATTAAAAATATTCTTTCCCATGTGGCTCCCCTAAAGCTTGTTTTGGTGCATGGATCAGCTGAAGCTACAGAACATCTGAAGCAGCATTGCCTGAAGCATGTTTGTCCTCACGTCTATGCTCCACAAATTGAAGAGACAATTGATGTTACCTCTGATTTATGTGCTTACAAGGTTCAACTATCTGAGAAGTTGATGAGTAATGTACTCTTCAAAAAGCTGGGAGAATATGAAATAGCTTGGGTTGATGCTGAAGTTGAGAAAACAGAAAATGAAATGCTTGCACTAGTCCCTGTCTCTTCACAAGTTCCTCCCCATAAATCTGTTCTTGTTGGTGATTTGAAATTGGCAGATTTCAAGCAGTTCCTCTCAAGCAAGGGTGTTCAGGTGGAATTTTCTGGTGGGGCTTTGCGATGTGGAGAATATGTAACTCTCCGAAAGGTTGGCGATACAACTCAGAAGGGCGGAAGTTCTGGTACTCAGCAAATTGTTATTGAAGGTCCTTTGTGCGAGGATTATTATAAAATTCGTGAATATCTTTATTCACAATTTTATCTGCTTTAG 2223 0.4188 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSLLHPLSKVAPTIDAVLLSHPDTLHLGALPYAMKQLGLAAPVFSTEPVYRLGLLTMYDQFLSRKQVSEFDLFTLDDIDSAFQSVTKLTYSQNHHFSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRRERHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRAGGNVLLPIDTAGRVLELILILESYWADENLTYPIYFLTYVASSTIDYVKSFLEWMSDSIAKSFEQTRENIFLLKYITLLINKAELDNAPDGPKVVLASMASLETGFSHDIFVEWASDVKNLVLFTERGQYATLARMLQADPPPKAVKVTVSKRVPLVGDELIAYEEEQNRIKKEEALKASLMKEEELKASQGPDNNVSDPMVVDASNDHLSAEAAGPRGGGYRDILIDGFVPPSTSIAPMFPCYENTSEWDDFGEVINPDDYVIKDEDMDQGAMHAGGDINGKLDEGAASLILDTKPSKVISDERTVQVRCSLVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGEYEIAWVDAEVEKTENEMLALVPVSSQVPPHKSVLVGDLKLADFKQFLSSKGVQVEFSGGALRCGEYVTLRKVGDTTQKGGSSGTQQIVIEGPLCEDYYKIREYLYSQFYLL* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3139 740 SMART Beta_Casp_2 242 365 IPR022712 -
Ahy5g3139 740 Pfam Cleavage and polyadenylation factor 2 C-terminal 646 737 IPR025069 -
Ahy5g3139 740 Pfam Beta-Casp domain 242 365 IPR022712 -
Ahy5g3139 740 SUPERFAMILY Metallo-hydrolase/oxidoreductase 5 603 IPR036866 -
Ahy5g3139 740 Coils Coil 392 412 - -
Ahy5g3139 740 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 1 739 IPR027075 GO:0005847|GO:0006378|GO:0006379
Ahy5g3139 740 Pfam Metallo-beta-lactamase superfamily domain 22 188 IPR001279 -
Ahy5g3139 740 CDD CPSF2-like_MBL-fold 8 203 IPR035639 -
Ahy5g3139 740 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 534 585 IPR011108 -
Ahy5g3139 740 Gene3D - 7 256 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3139 Ahy-Chr5 113230516 113237099 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3139 K14402 - gmx:100777002 1371.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3548 15 158293816 158299974 Ahy5g3139 5 113230516 113237099 hybridization